Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21328

Experiment: Myristic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21326 and SM_b21327 overlap by 4 nucleotidesSM_b21327 and SM_b21328 are separated by 45 nucleotidesSM_b21328 and SM_b21329 are separated by 58 nucleotidesSM_b21329 and SM_b21330 are separated by 215 nucleotidesSM_b21330 and SM_b21331 are separated by 231 nucleotides SM_b21326: SM_b21326 - dTDP-D-glucose 4,6-dehydratase, at 995,259 to 996,329 _b21326 SM_b21327: SM_b21327 - dTDP-4-dehydrorhamnose reductase, at 996,326 to 997,228 _b21327 SM_b21328: SM_b21328 - Sir2-like transcriptional silencer protein, at 997,274 to 998,092 _b21328 SM_b21329: SM_b21329 - hypothetical protein, at 998,151 to 998,321 _b21329 SM_b21330: SM_b21330 - hypothetical protein, at 998,537 to 998,746 _b21330 SM_b21331: SM_b21331 - hypothetical protein, at 998,978 to 999,298 _b21331 Position (kb) 997 998 999Strain fitness (log2 ratio) -2 -1 0 1at 996.286 kb on - strandat 996.388 kb on + strandat 996.412 kb on + strandat 996.510 kb on - strand, within SM_b21327at 996.510 kb on - strand, within SM_b21327at 996.623 kb on - strand, within SM_b21327at 996.635 kb on + strand, within SM_b21327at 996.636 kb on - strand, within SM_b21327at 996.636 kb on - strand, within SM_b21327at 996.665 kb on + strand, within SM_b21327at 996.666 kb on - strand, within SM_b21327at 996.666 kb on - strand, within SM_b21327at 996.666 kb on - strand, within SM_b21327at 996.666 kb on - strand, within SM_b21327at 996.694 kb on + strand, within SM_b21327at 996.694 kb on + strand, within SM_b21327at 996.783 kb on - strand, within SM_b21327at 996.845 kb on - strand, within SM_b21327at 996.913 kb on + strand, within SM_b21327at 996.914 kb on - strand, within SM_b21327at 996.988 kb on - strand, within SM_b21327at 996.988 kb on - strand, within SM_b21327at 997.227 kb on - strandat 997.416 kb on + strand, within SM_b21328at 997.416 kb on + strand, within SM_b21328at 997.416 kb on + strand, within SM_b21328at 997.416 kb on + strand, within SM_b21328at 997.416 kb on + strand, within SM_b21328at 997.417 kb on - strand, within SM_b21328at 997.417 kb on - strand, within SM_b21328at 997.417 kb on - strand, within SM_b21328at 997.644 kb on + strand, within SM_b21328at 997.645 kb on - strand, within SM_b21328at 997.710 kb on + strand, within SM_b21328at 997.710 kb on + strand, within SM_b21328at 997.732 kb on - strand, within SM_b21328at 997.732 kb on - strand, within SM_b21328at 997.755 kb on + strand, within SM_b21328at 997.755 kb on + strand, within SM_b21328at 997.756 kb on - strand, within SM_b21328at 997.767 kb on + strand, within SM_b21328at 997.768 kb on - strand, within SM_b21328at 997.917 kb on + strand, within SM_b21328at 998.132 kb on - strandat 998.152 kb on + strandat 998.153 kb on - strandat 998.303 kb on + strand, within SM_b21329at 998.303 kb on + strand, within SM_b21329at 998.304 kb on - strand, within SM_b21329at 998.314 kb on + strandat 998.314 kb on + strandat 998.422 kb on + strandat 998.532 kb on + strandat 998.533 kb on - strandat 998.697 kb on + strand, within SM_b21330at 998.698 kb on - strand, within SM_b21330at 998.720 kb on + strand, within SM_b21330at 998.836 kb on + strandat 998.837 kb on - strandat 998.887 kb on + strandat 998.887 kb on + strandat 998.887 kb on + strandat 998.887 kb on + strandat 998.888 kb on - strandat 998.888 kb on - strandat 998.888 kb on - strandat 999.011 kb on - strand, within SM_b21331at 999.011 kb on - strand, within SM_b21331

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Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
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996,286 - +0.0
996,388 + -0.1
996,412 + -1.4
996,510 - SM_b21327 0.20 -0.0
996,510 - SM_b21327 0.20 -0.1
996,623 - SM_b21327 0.33 -0.1
996,635 + SM_b21327 0.34 +1.1
996,636 - SM_b21327 0.34 +0.0
996,636 - SM_b21327 0.34 -0.8
996,665 + SM_b21327 0.38 -0.6
996,666 - SM_b21327 0.38 -0.4
996,666 - SM_b21327 0.38 +0.6
996,666 - SM_b21327 0.38 -0.5
996,666 - SM_b21327 0.38 -0.9
996,694 + SM_b21327 0.41 -0.2
996,694 + SM_b21327 0.41 +0.0
996,783 - SM_b21327 0.51 +0.2
996,845 - SM_b21327 0.57 +0.6
996,913 + SM_b21327 0.65 -1.0
996,914 - SM_b21327 0.65 +0.1
996,988 - SM_b21327 0.73 +1.1
996,988 - SM_b21327 0.73 +0.1
997,227 - -0.5
997,416 + SM_b21328 0.17 -0.0
997,416 + SM_b21328 0.17 -0.1
997,416 + SM_b21328 0.17 +0.2
997,416 + SM_b21328 0.17 -0.2
997,416 + SM_b21328 0.17 +0.6
997,417 - SM_b21328 0.17 +1.4
997,417 - SM_b21328 0.17 -0.2
997,417 - SM_b21328 0.17 +0.5
997,644 + SM_b21328 0.45 -1.0
997,645 - SM_b21328 0.45 -0.5
997,710 + SM_b21328 0.53 -0.6
997,710 + SM_b21328 0.53 -1.2
997,732 - SM_b21328 0.56 -0.3
997,732 - SM_b21328 0.56 -0.6
997,755 + SM_b21328 0.59 -0.5
997,755 + SM_b21328 0.59 -1.4
997,756 - SM_b21328 0.59 -0.1
997,767 + SM_b21328 0.60 -0.9
997,768 - SM_b21328 0.60 -0.0
997,917 + SM_b21328 0.79 -1.0
998,132 - +0.4
998,152 + -0.6
998,153 - -0.6
998,303 + SM_b21329 0.89 -0.4
998,303 + SM_b21329 0.89 -0.2
998,304 - SM_b21329 0.89 -0.6
998,314 + -0.4
998,314 + +0.2
998,422 + -0.1
998,532 + -0.3
998,533 - -1.0
998,697 + SM_b21330 0.76 +0.2
998,698 - SM_b21330 0.77 +0.0
998,720 + SM_b21330 0.87 -0.1
998,836 + +1.0
998,837 - -0.4
998,887 + +1.4
998,887 + +0.7
998,887 + +0.8
998,887 + +0.5
998,888 - +0.2
998,888 - -2.3
998,888 - +0.5
999,011 - SM_b21331 0.10 -0.5
999,011 - SM_b21331 0.10 +0.3

Or see this region's nucleotide sequence