Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20993

Experiment: Myristic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20992 and SM_b21674 are separated by 32 nucleotidesSM_b21674 and SM_b20993 are separated by 287 nucleotidesSM_b20993 and SM_b20994 are separated by 271 nucleotides SM_b20992: SM_b20992 - hypothetical protein, at 1,226,845 to 1,228,248 _b20992 SM_b21674: SM_b21674 - hypothetical protein, at 1,228,281 to 1,228,526 _b21674 SM_b20993: SM_b20993 - FMNH2-dependent monooxygenase, at 1,228,814 to 1,230,025 _b20993 SM_b20994: SM_b20994 - hypothetical protein, at 1,230,297 to 1,230,830 _b20994 Position (kb) 1228 1229 1230 1231Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1227.882 kb on - strand, within SM_b20992at 1228.097 kb on + strand, within SM_b20992at 1228.298 kb on + strandat 1228.298 kb on + strandat 1228.299 kb on - strandat 1228.349 kb on - strand, within SM_b21674at 1228.350 kb on + strand, within SM_b21674at 1228.450 kb on - strand, within SM_b21674at 1228.503 kb on - strandat 1228.525 kb on - strandat 1228.525 kb on - strandat 1228.552 kb on - strandat 1228.552 kb on - strandat 1228.552 kb on - strandat 1228.595 kb on + strandat 1228.595 kb on + strandat 1228.621 kb on + strandat 1228.663 kb on + strandat 1228.761 kb on + strandat 1228.762 kb on - strandat 1228.775 kb on + strandat 1228.775 kb on + strandat 1228.775 kb on + strandat 1228.776 kb on - strandat 1228.776 kb on - strandat 1228.778 kb on + strandat 1228.778 kb on + strandat 1228.778 kb on + strandat 1228.778 kb on + strandat 1228.778 kb on + strandat 1228.779 kb on - strandat 1228.779 kb on - strandat 1229.037 kb on + strand, within SM_b20993at 1229.037 kb on + strand, within SM_b20993at 1229.120 kb on + strand, within SM_b20993at 1229.303 kb on + strand, within SM_b20993at 1229.303 kb on + strand, within SM_b20993at 1229.303 kb on + strand, within SM_b20993at 1229.303 kb on + strand, within SM_b20993at 1229.303 kb on + strand, within SM_b20993at 1229.304 kb on - strand, within SM_b20993at 1229.304 kb on - strand, within SM_b20993at 1229.308 kb on + strand, within SM_b20993at 1229.308 kb on + strand, within SM_b20993at 1229.308 kb on + strand, within SM_b20993at 1229.309 kb on - strand, within SM_b20993at 1229.530 kb on + strand, within SM_b20993at 1229.916 kb on - strandat 1229.984 kb on + strandat 1229.984 kb on + strandat 1229.984 kb on + strandat 1229.985 kb on - strandat 1229.985 kb on - strandat 1230.000 kb on + strandat 1230.194 kb on + strandat 1230.195 kb on - strandat 1230.240 kb on - strandat 1230.250 kb on - strandat 1230.273 kb on + strandat 1230.273 kb on + strandat 1230.273 kb on + strandat 1230.273 kb on + strandat 1230.274 kb on - strandat 1230.274 kb on - strandat 1230.281 kb on - strandat 1230.463 kb on + strand, within SM_b20994at 1230.464 kb on - strand, within SM_b20994at 1230.464 kb on - strand, within SM_b20994at 1230.730 kb on + strand, within SM_b20994at 1230.730 kb on + strand, within SM_b20994at 1230.914 kb on + strandat 1230.927 kb on + strandat 1230.928 kb on - strandat 1230.928 kb on - strandat 1230.939 kb on - strandat 1230.940 kb on + strandat 1230.941 kb on - strandat 1230.983 kb on + strandat 1230.987 kb on + strandat 1230.987 kb on + strandat 1230.999 kb on - strandat 1231.012 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
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1,227,882 - SM_b20992 0.74 -0.2
1,228,097 + SM_b20992 0.89 -0.6
1,228,298 + -0.6
1,228,298 + +2.4
1,228,299 - +0.4
1,228,349 - SM_b21674 0.28 +0.4
1,228,350 + SM_b21674 0.28 -2.2
1,228,450 - SM_b21674 0.69 +0.1
1,228,503 - +0.2
1,228,525 - -0.4
1,228,525 - +2.1
1,228,552 - -0.4
1,228,552 - +0.7
1,228,552 - +0.4
1,228,595 + +1.0
1,228,595 + -1.6
1,228,621 + +0.6
1,228,663 + -0.7
1,228,761 + +0.2
1,228,762 - +0.2
1,228,775 + +0.2
1,228,775 + -1.7
1,228,775 + +2.8
1,228,776 - +0.2
1,228,776 - -1.2
1,228,778 + +0.1
1,228,778 + +0.7
1,228,778 + -0.5
1,228,778 + -0.1
1,228,778 + +2.0
1,228,779 - -0.3
1,228,779 - -1.1
1,229,037 + SM_b20993 0.18 -0.9
1,229,037 + SM_b20993 0.18 +1.3
1,229,120 + SM_b20993 0.25 -0.8
1,229,303 + SM_b20993 0.40 +0.7
1,229,303 + SM_b20993 0.40 -1.1
1,229,303 + SM_b20993 0.40 -0.3
1,229,303 + SM_b20993 0.40 -0.6
1,229,303 + SM_b20993 0.40 -0.9
1,229,304 - SM_b20993 0.40 -0.6
1,229,304 - SM_b20993 0.40 -0.6
1,229,308 + SM_b20993 0.41 +1.4
1,229,308 + SM_b20993 0.41 -0.1
1,229,308 + SM_b20993 0.41 -1.2
1,229,309 - SM_b20993 0.41 -0.5
1,229,530 + SM_b20993 0.59 -0.3
1,229,916 - +0.0
1,229,984 + -0.9
1,229,984 + -0.9
1,229,984 + -0.4
1,229,985 - -0.3
1,229,985 - +1.4
1,230,000 + -0.4
1,230,194 + -0.8
1,230,195 - +0.1
1,230,240 - +0.1
1,230,250 - +0.4
1,230,273 + +0.3
1,230,273 + +0.2
1,230,273 + -0.3
1,230,273 + +1.2
1,230,274 - +0.9
1,230,274 - +0.3
1,230,281 - +1.1
1,230,463 + SM_b20994 0.31 -0.5
1,230,464 - SM_b20994 0.31 -0.2
1,230,464 - SM_b20994 0.31 -0.6
1,230,730 + SM_b20994 0.81 -0.6
1,230,730 + SM_b20994 0.81 -2.1
1,230,914 + -0.3
1,230,927 + -1.5
1,230,928 - -2.6
1,230,928 - +1.4
1,230,939 - -0.6
1,230,940 + -0.5
1,230,941 - -0.5
1,230,983 + -0.6
1,230,987 + -1.1
1,230,987 + -0.1
1,230,999 - -0.9
1,231,012 + +0.2

Or see this region's nucleotide sequence