Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20871

Experiment: Myristic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20870 and SM_b20871 are separated by 94 nucleotidesSM_b20871 and SM_b20872 are separated by 138 nucleotides SM_b20870: SM_b20870 - LysR family transcriptional regulator, at 1,277,200 to 1,278,096 _b20870 SM_b20871: SM_b20871 - short-chain dehydrogenase, at 1,278,191 to 1,278,940 _b20871 SM_b20872: SM_b20872 - transthyretin-like protein, at 1,279,079 to 1,279,468 _b20872 Position (kb) 1278 1279Strain fitness (log2 ratio) -2 -1 0 1 2at 1277.206 kb on - strandat 1277.295 kb on + strand, within SM_b20870at 1277.295 kb on + strand, within SM_b20870at 1277.295 kb on + strand, within SM_b20870at 1277.296 kb on - strand, within SM_b20870at 1277.296 kb on - strand, within SM_b20870at 1277.296 kb on - strand, within SM_b20870at 1277.385 kb on - strand, within SM_b20870at 1277.385 kb on - strand, within SM_b20870at 1277.458 kb on + strand, within SM_b20870at 1277.459 kb on - strand, within SM_b20870at 1277.497 kb on + strand, within SM_b20870at 1277.497 kb on + strand, within SM_b20870at 1277.606 kb on - strand, within SM_b20870at 1277.606 kb on - strand, within SM_b20870at 1277.628 kb on + strand, within SM_b20870at 1277.628 kb on + strand, within SM_b20870at 1277.629 kb on - strand, within SM_b20870at 1277.629 kb on - strand, within SM_b20870at 1277.631 kb on - strand, within SM_b20870at 1277.631 kb on - strand, within SM_b20870at 1277.631 kb on - strand, within SM_b20870at 1277.672 kb on + strand, within SM_b20870at 1277.672 kb on + strand, within SM_b20870at 1277.673 kb on - strand, within SM_b20870at 1277.673 kb on - strand, within SM_b20870at 1277.673 kb on - strand, within SM_b20870at 1277.721 kb on + strand, within SM_b20870at 1277.721 kb on + strand, within SM_b20870at 1277.721 kb on + strand, within SM_b20870at 1277.722 kb on - strand, within SM_b20870at 1277.773 kb on + strand, within SM_b20870at 1278.137 kb on + strandat 1278.137 kb on + strandat 1278.137 kb on + strandat 1278.137 kb on + strandat 1278.137 kb on + strandat 1278.137 kb on + strandat 1278.137 kb on + strandat 1278.160 kb on + strandat 1278.161 kb on - strandat 1278.164 kb on + strandat 1278.165 kb on - strandat 1278.185 kb on + strandat 1278.186 kb on - strandat 1278.186 kb on - strandat 1278.235 kb on + strandat 1278.440 kb on + strand, within SM_b20871at 1278.440 kb on + strand, within SM_b20871at 1278.440 kb on + strand, within SM_b20871at 1278.440 kb on + strand, within SM_b20871at 1278.440 kb on + strand, within SM_b20871at 1278.441 kb on - strand, within SM_b20871at 1278.441 kb on - strand, within SM_b20871at 1278.441 kb on - strand, within SM_b20871at 1278.441 kb on - strand, within SM_b20871at 1278.441 kb on - strand, within SM_b20871at 1278.441 kb on - strand, within SM_b20871at 1278.500 kb on + strand, within SM_b20871at 1278.500 kb on + strand, within SM_b20871at 1278.500 kb on + strand, within SM_b20871at 1278.501 kb on - strand, within SM_b20871at 1278.501 kb on - strand, within SM_b20871at 1278.592 kb on + strand, within SM_b20871at 1278.592 kb on + strand, within SM_b20871at 1278.592 kb on + strand, within SM_b20871at 1278.639 kb on - strand, within SM_b20871at 1278.715 kb on - strand, within SM_b20871at 1278.715 kb on - strand, within SM_b20871at 1278.978 kb on + strandat 1278.979 kb on - strandat 1279.003 kb on - strandat 1279.006 kb on + strandat 1279.030 kb on + strandat 1279.030 kb on + strandat 1279.030 kb on + strandat 1279.031 kb on - strandat 1279.102 kb on - strandat 1279.134 kb on + strand, within SM_b20872at 1279.134 kb on + strand, within SM_b20872at 1279.135 kb on - strand, within SM_b20872at 1279.135 kb on - strand, within SM_b20872at 1279.219 kb on + strand, within SM_b20872at 1279.224 kb on + strand, within SM_b20872at 1279.224 kb on + strand, within SM_b20872at 1279.252 kb on - strand, within SM_b20872at 1279.315 kb on + strand, within SM_b20872at 1279.315 kb on + strand, within SM_b20872at 1279.316 kb on - strand, within SM_b20872at 1279.443 kb on + strandat 1279.443 kb on + strandat 1279.443 kb on + strandat 1279.443 kb on + strandat 1279.443 kb on + strandat 1279.444 kb on - strandat 1279.444 kb on - strandat 1279.444 kb on - strandat 1279.481 kb on + strandat 1279.481 kb on + strandat 1279.481 kb on + strandat 1279.481 kb on + strandat 1279.481 kb on + strandat 1279.482 kb on - strandat 1279.615 kb on + strandat 1279.615 kb on + strandat 1279.618 kb on + strandat 1279.619 kb on - strandat 1279.710 kb on + strandat 1279.811 kb on + strandat 1279.811 kb on + strandat 1279.831 kb on + strandat 1279.833 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
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1,277,206 - -0.4
1,277,295 + SM_b20870 0.11 +0.6
1,277,295 + SM_b20870 0.11 -2.0
1,277,295 + SM_b20870 0.11 -0.4
1,277,296 - SM_b20870 0.11 -0.2
1,277,296 - SM_b20870 0.11 +0.1
1,277,296 - SM_b20870 0.11 -0.4
1,277,385 - SM_b20870 0.21 +0.2
1,277,385 - SM_b20870 0.21 +0.1
1,277,458 + SM_b20870 0.29 +0.7
1,277,459 - SM_b20870 0.29 -2.6
1,277,497 + SM_b20870 0.33 -0.4
1,277,497 + SM_b20870 0.33 -0.1
1,277,606 - SM_b20870 0.45 -0.6
1,277,606 - SM_b20870 0.45 -0.4
1,277,628 + SM_b20870 0.48 +0.5
1,277,628 + SM_b20870 0.48 +0.5
1,277,629 - SM_b20870 0.48 -1.1
1,277,629 - SM_b20870 0.48 +0.2
1,277,631 - SM_b20870 0.48 -1.0
1,277,631 - SM_b20870 0.48 -0.9
1,277,631 - SM_b20870 0.48 +0.6
1,277,672 + SM_b20870 0.53 -0.2
1,277,672 + SM_b20870 0.53 +0.0
1,277,673 - SM_b20870 0.53 +0.4
1,277,673 - SM_b20870 0.53 -0.2
1,277,673 - SM_b20870 0.53 -1.4
1,277,721 + SM_b20870 0.58 +0.2
1,277,721 + SM_b20870 0.58 +0.2
1,277,721 + SM_b20870 0.58 -0.5
1,277,722 - SM_b20870 0.58 +0.0
1,277,773 + SM_b20870 0.64 +0.0
1,278,137 + +0.3
1,278,137 + +0.1
1,278,137 + +0.1
1,278,137 + +0.2
1,278,137 + -1.4
1,278,137 + -0.4
1,278,137 + -0.2
1,278,160 + -0.4
1,278,161 - +0.2
1,278,164 + -0.6
1,278,165 - +1.4
1,278,185 + -0.3
1,278,186 - +1.7
1,278,186 - -0.3
1,278,235 + +0.2
1,278,440 + SM_b20871 0.33 -0.2
1,278,440 + SM_b20871 0.33 +0.3
1,278,440 + SM_b20871 0.33 -0.6
1,278,440 + SM_b20871 0.33 -0.7
1,278,440 + SM_b20871 0.33 +0.2
1,278,441 - SM_b20871 0.33 +0.6
1,278,441 - SM_b20871 0.33 -0.6
1,278,441 - SM_b20871 0.33 +0.7
1,278,441 - SM_b20871 0.33 -1.6
1,278,441 - SM_b20871 0.33 +0.4
1,278,441 - SM_b20871 0.33 +0.2
1,278,500 + SM_b20871 0.41 +1.3
1,278,500 + SM_b20871 0.41 -1.0
1,278,500 + SM_b20871 0.41 +0.4
1,278,501 - SM_b20871 0.41 -0.3
1,278,501 - SM_b20871 0.41 -0.1
1,278,592 + SM_b20871 0.53 +0.5
1,278,592 + SM_b20871 0.53 +1.8
1,278,592 + SM_b20871 0.53 +0.3
1,278,639 - SM_b20871 0.60 +0.1
1,278,715 - SM_b20871 0.70 -0.9
1,278,715 - SM_b20871 0.70 +0.1
1,278,978 + -0.2
1,278,979 - -0.1
1,279,003 - +0.9
1,279,006 + -0.3
1,279,030 + +0.5
1,279,030 + -0.3
1,279,030 + -0.9
1,279,031 - -0.2
1,279,102 - +0.7
1,279,134 + SM_b20872 0.14 +1.1
1,279,134 + SM_b20872 0.14 +0.6
1,279,135 - SM_b20872 0.14 +0.2
1,279,135 - SM_b20872 0.14 -0.5
1,279,219 + SM_b20872 0.36 -0.3
1,279,224 + SM_b20872 0.37 -0.1
1,279,224 + SM_b20872 0.37 -0.1
1,279,252 - SM_b20872 0.44 -1.3
1,279,315 + SM_b20872 0.61 -1.2
1,279,315 + SM_b20872 0.61 -0.7
1,279,316 - SM_b20872 0.61 +0.1
1,279,443 + -1.0
1,279,443 + +0.1
1,279,443 + +0.4
1,279,443 + +0.0
1,279,443 + -0.8
1,279,444 - -0.7
1,279,444 - -2.2
1,279,444 - +0.2
1,279,481 + -0.4
1,279,481 + +0.3
1,279,481 + -0.5
1,279,481 + +0.7
1,279,481 + -0.2
1,279,482 - -0.1
1,279,615 + +0.0
1,279,615 + -0.2
1,279,618 + +1.4
1,279,619 - -0.3
1,279,710 + -1.0
1,279,811 + -1.3
1,279,811 + +0.6
1,279,831 + -0.5
1,279,833 + -0.7

Or see this region's nucleotide sequence