Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20757

Experiment: Myristic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20756 and SM_b20757 are separated by 225 nucleotidesSM_b20757 and SM_b20758 are separated by 11 nucleotidesSM_b20758 and SM_b20759 are separated by 122 nucleotides SM_b20756: SM_b20756 - propionyl-CoA carboxylase subunit alpha, at 1,546,741 to 1,548,753 _b20756 SM_b20757: SM_b20757 - methylmalonyl-CoA mutase, at 1,548,979 to 1,551,117 _b20757 SM_b20758: SM_b20758 - ArsR family transcriptional regulator, at 1,551,129 to 1,551,863 _b20758 SM_b20759: SM_b20759 - carbon-phosphorus lyase, at 1,551,986 to 1,552,456 _b20759 Position (kb) 1548 1549 1550 1551 1552Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1548.086 kb on - strand, within SM_b20756at 1548.313 kb on + strand, within SM_b20756at 1548.313 kb on + strand, within SM_b20756at 1548.313 kb on + strand, within SM_b20756at 1548.314 kb on - strand, within SM_b20756at 1548.314 kb on - strand, within SM_b20756at 1548.440 kb on + strand, within SM_b20756at 1548.658 kb on - strandat 1548.816 kb on + strandat 1549.178 kb on - strandat 1549.208 kb on - strand, within SM_b20757at 1549.246 kb on + strand, within SM_b20757at 1549.570 kb on + strand, within SM_b20757at 1549.570 kb on + strand, within SM_b20757at 1549.571 kb on - strand, within SM_b20757at 1549.576 kb on + strand, within SM_b20757at 1549.577 kb on - strandat 1549.623 kb on + strand, within SM_b20757at 1549.738 kb on + strand, within SM_b20757at 1549.967 kb on - strand, within SM_b20757at 1550.162 kb on - strand, within SM_b20757at 1550.162 kb on - strand, within SM_b20757at 1550.164 kb on + strand, within SM_b20757at 1550.351 kb on - strand, within SM_b20757at 1550.351 kb on - strand, within SM_b20757at 1550.632 kb on - strand, within SM_b20757at 1550.635 kb on + strand, within SM_b20757at 1550.636 kb on - strand, within SM_b20757at 1550.647 kb on + strand, within SM_b20757at 1551.004 kb on + strandat 1551.004 kb on + strandat 1551.005 kb on - strandat 1551.011 kb on - strandat 1551.201 kb on + strandat 1551.371 kb on - strand, within SM_b20758at 1551.409 kb on + strand, within SM_b20758at 1551.409 kb on + strand, within SM_b20758at 1551.410 kb on - strand, within SM_b20758at 1551.773 kb on - strand, within SM_b20758at 1551.823 kb on - strandat 1551.944 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
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1,548,086 - SM_b20756 0.67 +1.5
1,548,313 + SM_b20756 0.78 -0.3
1,548,313 + SM_b20756 0.78 +1.5
1,548,313 + SM_b20756 0.78 +0.7
1,548,314 - SM_b20756 0.78 +0.8
1,548,314 - SM_b20756 0.78 -0.4
1,548,440 + SM_b20756 0.84 -0.7
1,548,658 - +0.0
1,548,816 + +0.1
1,549,178 - -2.1
1,549,208 - SM_b20757 0.11 -0.1
1,549,246 + SM_b20757 0.12 -2.9
1,549,570 + SM_b20757 0.28 -2.1
1,549,570 + SM_b20757 0.28 -2.9
1,549,571 - SM_b20757 0.28 -2.1
1,549,576 + SM_b20757 0.28 -3.8
1,549,577 - +0.5
1,549,623 + SM_b20757 0.30 -1.3
1,549,738 + SM_b20757 0.35 -2.6
1,549,967 - SM_b20757 0.46 -3.4
1,550,162 - SM_b20757 0.55 -4.4
1,550,162 - SM_b20757 0.55 -3.0
1,550,164 + SM_b20757 0.55 -3.8
1,550,351 - SM_b20757 0.64 -3.2
1,550,351 - SM_b20757 0.64 -1.8
1,550,632 - SM_b20757 0.77 +1.5
1,550,635 + SM_b20757 0.77 -1.8
1,550,636 - SM_b20757 0.77 -3.1
1,550,647 + SM_b20757 0.78 -0.5
1,551,004 + -3.0
1,551,004 + -2.6
1,551,005 - -0.8
1,551,011 - -1.8
1,551,201 + -1.1
1,551,371 - SM_b20758 0.33 +0.8
1,551,409 + SM_b20758 0.38 +3.8
1,551,409 + SM_b20758 0.38 -0.2
1,551,410 - SM_b20758 0.38 +1.0
1,551,773 - SM_b20758 0.88 -0.8
1,551,823 - +1.0
1,551,944 - +1.5

Or see this region's nucleotide sequence