Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20682

Experiment: Myristic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20681 and SM_b20682 are separated by 169 nucleotidesSM_b20682 and SM_b20683 are separated by 126 nucleotides SM_b20681: SM_b20681 - glyoxylate carboligase, at 1,482,468 to 1,484,252 _b20681 SM_b20682: SM_b20682 - IclR family transcriptional regulator, at 1,484,422 to 1,485,243 _b20682 SM_b20683: SM_b20683 - LysR family transcriptional regulator, at 1,485,370 to 1,486,269 _b20683 Position (kb) 1484 1485 1486Strain fitness (log2 ratio) -3 -2 -1 0 1at 1483.703 kb on - strand, within SM_b20681at 1483.721 kb on - strand, within SM_b20681at 1483.990 kb on + strand, within SM_b20681at 1484.034 kb on + strand, within SM_b20681at 1484.035 kb on - strand, within SM_b20681at 1484.072 kb on - strand, within SM_b20681at 1484.116 kb on - strandat 1484.116 kb on - strandat 1484.775 kb on + strand, within SM_b20682at 1484.784 kb on - strand, within SM_b20682at 1484.784 kb on - strand, within SM_b20682at 1484.964 kb on + strand, within SM_b20682at 1485.098 kb on - strand, within SM_b20682at 1485.262 kb on + strandat 1485.262 kb on + strandat 1485.262 kb on + strandat 1485.262 kb on + strandat 1485.263 kb on - strandat 1485.263 kb on - strandat 1485.291 kb on + strandat 1485.372 kb on - strandat 1485.467 kb on + strand, within SM_b20683at 1485.468 kb on - strand, within SM_b20683at 1485.468 kb on - strand, within SM_b20683at 1485.594 kb on - strand, within SM_b20683at 1485.618 kb on + strand, within SM_b20683at 1485.619 kb on - strand, within SM_b20683at 1485.622 kb on - strand, within SM_b20683at 1485.625 kb on + strand, within SM_b20683at 1485.626 kb on - strand, within SM_b20683at 1485.659 kb on + strand, within SM_b20683at 1485.985 kb on + strand, within SM_b20683at 1485.986 kb on - strand, within SM_b20683at 1485.986 kb on - strand, within SM_b20683at 1486.001 kb on - strand, within SM_b20683

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Per-strain Table

Position Strand Gene LocusTag Fraction Myristic (C)
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1,483,703 - SM_b20681 0.69 -0.3
1,483,721 - SM_b20681 0.70 +0.3
1,483,990 + SM_b20681 0.85 -1.5
1,484,034 + SM_b20681 0.88 -0.4
1,484,035 - SM_b20681 0.88 +0.2
1,484,072 - SM_b20681 0.90 +0.1
1,484,116 - +0.1
1,484,116 - -0.8
1,484,775 + SM_b20682 0.43 -1.4
1,484,784 - SM_b20682 0.44 -0.8
1,484,784 - SM_b20682 0.44 -0.3
1,484,964 + SM_b20682 0.66 -2.9
1,485,098 - SM_b20682 0.82 -0.7
1,485,262 + -0.6
1,485,262 + -0.1
1,485,262 + -0.1
1,485,262 + +0.1
1,485,263 - +0.6
1,485,263 - +0.5
1,485,291 + +0.2
1,485,372 - -0.4
1,485,467 + SM_b20683 0.11 +1.0
1,485,468 - SM_b20683 0.11 +0.1
1,485,468 - SM_b20683 0.11 +0.2
1,485,594 - SM_b20683 0.25 -0.3
1,485,618 + SM_b20683 0.28 -0.9
1,485,619 - SM_b20683 0.28 +0.4
1,485,622 - SM_b20683 0.28 +0.5
1,485,625 + SM_b20683 0.28 -0.2
1,485,626 - SM_b20683 0.28 +0.3
1,485,659 + SM_b20683 0.32 +0.1
1,485,985 + SM_b20683 0.68 -0.4
1,485,986 - SM_b20683 0.68 -0.4
1,485,986 - SM_b20683 0.68 +0.6
1,486,001 - SM_b20683 0.70 -1.3

Or see this region's nucleotide sequence