Experiment: Plant=Tomato_C42L PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS20100 and RALBFv3_RS20105 are separated by 7 nucleotides RALBFv3_RS20105 and RALBFv3_RS20110 are separated by 10 nucleotides RALBFv3_RS20110 and RALBFv3_RS24490 are separated by 328 nucleotides RALBFv3_RS24490 and RALBFv3_RS20115 are separated by 474 nucleotides
RALBFv3_RS20100: RALBFv3_RS20100 - sterol desaturase family protein, at 1,204,927 to 1,206,153
_RS20100
RALBFv3_RS20105: RALBFv3_RS20105 - hypothetical protein, at 1,206,161 to 1,206,679
_RS20105
RALBFv3_RS20110: RALBFv3_RS20110 - hypothetical protein, at 1,206,690 to 1,206,890
_RS20110
RALBFv3_RS24490: RALBFv3_RS24490 - hypothetical protein, at 1,207,219 to 1,207,344
_RS24490
RALBFv3_RS20115: RALBFv3_RS20115 - L-aspartate dehydrogenase, at 1,207,819 to 1,208,625
_RS20115
Position (kb) 1206
1207 Strain fitness (log2 ratio) -1
0
1
2
3 at 1205.836 kb on + strand, within RALBFv3_RS20100 at 1205.836 kb on + strand, within RALBFv3_RS20100 at 1205.837 kb on - strand, within RALBFv3_RS20100 at 1205.837 kb on - strand, within RALBFv3_RS20100 at 1206.004 kb on + strand, within RALBFv3_RS20100 at 1206.053 kb on - strand at 1206.070 kb on + strand at 1206.070 kb on + strand at 1206.071 kb on - strand at 1206.233 kb on + strand, within RALBFv3_RS20105 at 1206.234 kb on - strand, within RALBFv3_RS20105 at 1206.312 kb on - strand, within RALBFv3_RS20105 at 1206.312 kb on - strand, within RALBFv3_RS20105 at 1206.312 kb on - strand, within RALBFv3_RS20105 at 1206.315 kb on - strand, within RALBFv3_RS20105 at 1206.476 kb on + strand, within RALBFv3_RS20105 at 1206.736 kb on + strand, within RALBFv3_RS20110 at 1206.737 kb on - strand, within RALBFv3_RS20110 at 1206.757 kb on + strand, within RALBFv3_RS20110 at 1206.757 kb on + strand, within RALBFv3_RS20110 at 1206.758 kb on - strand, within RALBFv3_RS20110 at 1206.758 kb on - strand, within RALBFv3_RS20110 at 1206.766 kb on + strand, within RALBFv3_RS20110 at 1206.766 kb on + strand, within RALBFv3_RS20110 at 1206.766 kb on + strand, within RALBFv3_RS20110 at 1206.766 kb on + strand, within RALBFv3_RS20110 at 1206.767 kb on - strand, within RALBFv3_RS20110 at 1206.767 kb on - strand, within RALBFv3_RS20110 at 1206.767 kb on - strand, within RALBFv3_RS20110 at 1206.767 kb on - strand, within RALBFv3_RS20110 at 1206.767 kb on - strand, within RALBFv3_RS20110 at 1206.868 kb on - strand, within RALBFv3_RS20110 at 1206.868 kb on - strand, within RALBFv3_RS20110 at 1207.224 kb on + strand at 1207.224 kb on + strand at 1207.225 kb on - strand at 1207.225 kb on - strand at 1207.373 kb on + strand at 1207.504 kb on - strand at 1207.504 kb on - strand at 1207.726 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C42L PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,205,836 + RALBFv3_RS20100 0.74 -0.3 1,205,836 + RALBFv3_RS20100 0.74 +0.3 1,205,837 - RALBFv3_RS20100 0.74 +0.5 1,205,837 - RALBFv3_RS20100 0.74 -1.1 1,206,004 + RALBFv3_RS20100 0.88 +0.4 1,206,053 - -0.1 1,206,070 + -0.3 1,206,070 + +1.3 1,206,071 - -0.8 1,206,233 + RALBFv3_RS20105 0.14 -1.6 1,206,234 - RALBFv3_RS20105 0.14 -0.1 1,206,312 - RALBFv3_RS20105 0.29 +0.4 1,206,312 - RALBFv3_RS20105 0.29 -1.6 1,206,312 - RALBFv3_RS20105 0.29 -1.0 1,206,315 - RALBFv3_RS20105 0.30 +0.3 1,206,476 + RALBFv3_RS20105 0.61 -1.5 1,206,736 + RALBFv3_RS20110 0.23 +1.7 1,206,737 - RALBFv3_RS20110 0.23 +0.3 1,206,757 + RALBFv3_RS20110 0.33 +0.8 1,206,757 + RALBFv3_RS20110 0.33 +1.3 1,206,758 - RALBFv3_RS20110 0.34 -0.3 1,206,758 - RALBFv3_RS20110 0.34 +0.7 1,206,766 + RALBFv3_RS20110 0.38 -0.3 1,206,766 + RALBFv3_RS20110 0.38 +0.3 1,206,766 + RALBFv3_RS20110 0.38 -0.9 1,206,766 + RALBFv3_RS20110 0.38 +3.3 1,206,767 - RALBFv3_RS20110 0.38 -1.1 1,206,767 - RALBFv3_RS20110 0.38 -0.2 1,206,767 - RALBFv3_RS20110 0.38 +3.6 1,206,767 - RALBFv3_RS20110 0.38 +0.5 1,206,767 - RALBFv3_RS20110 0.38 +0.5 1,206,868 - RALBFv3_RS20110 0.89 +0.3 1,206,868 - RALBFv3_RS20110 0.89 +1.4 1,207,224 + -0.4 1,207,224 + +0.3 1,207,225 - +1.3 1,207,225 - -0.1 1,207,373 + -0.3 1,207,504 - -0.3 1,207,504 - +0.1 1,207,726 + +0.5
Or see this region's nucleotide sequence