Experiment: Plant=Tomato_C42L PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS18875 and RALBFv3_RS18880 overlap by 4 nucleotides RALBFv3_RS18880 and RALBFv3_RS18885 are separated by 10 nucleotides RALBFv3_RS18885 and RALBFv3_RS18890 are separated by 98 nucleotides RALBFv3_RS18890 and RALBFv3_RS18895 are separated by 147 nucleotides
RALBFv3_RS18875: RALBFv3_RS18875 - NAD(P)/FAD-dependent oxidoreductase, at 782,649 to 784,049
_RS18875
RALBFv3_RS18880: RALBFv3_RS18880 - hypothetical protein, at 784,046 to 784,420
_RS18880
RALBFv3_RS18885: RALBFv3_RS18885 - Lrp/AsnC family transcriptional regulator, at 784,431 to 784,925
_RS18885
RALBFv3_RS18890: RALBFv3_RS18890 - aspartate aminotransferase family protein, at 785,024 to 786,427
_RS18890
RALBFv3_RS18895: RALBFv3_RS18895 - glyoxylate/hydroxypyruvate reductase A, at 786,575 to 787,507
_RS18895
Position (kb) 785
786
787 Strain fitness (log2 ratio) -2
-1
0
1
2 at 784.110 kb on + strand, within RALBFv3_RS18880 at 784.111 kb on - strand, within RALBFv3_RS18880 at 784.502 kb on - strand, within RALBFv3_RS18885 at 784.502 kb on - strand, within RALBFv3_RS18885 at 784.502 kb on - strand, within RALBFv3_RS18885 at 784.511 kb on - strand, within RALBFv3_RS18885 at 784.511 kb on - strand, within RALBFv3_RS18885 at 784.511 kb on - strand, within RALBFv3_RS18885 at 784.598 kb on - strand, within RALBFv3_RS18885 at 784.771 kb on + strand, within RALBFv3_RS18885 at 785.442 kb on + strand, within RALBFv3_RS18890 at 785.443 kb on - strand, within RALBFv3_RS18890 at 785.499 kb on + strand, within RALBFv3_RS18890 at 785.874 kb on + strand, within RALBFv3_RS18890 at 785.875 kb on - strand, within RALBFv3_RS18890 at 785.875 kb on - strand, within RALBFv3_RS18890 at 785.875 kb on - strand, within RALBFv3_RS18890 at 785.875 kb on - strand, within RALBFv3_RS18890 at 785.875 kb on - strand, within RALBFv3_RS18890 at 785.875 kb on - strand, within RALBFv3_RS18890 at 786.015 kb on + strand, within RALBFv3_RS18890 at 786.016 kb on - strand, within RALBFv3_RS18890 at 786.016 kb on - strand, within RALBFv3_RS18890 at 786.016 kb on - strand, within RALBFv3_RS18890 at 786.019 kb on - strand, within RALBFv3_RS18890 at 786.076 kb on - strand, within RALBFv3_RS18890 at 786.156 kb on + strand, within RALBFv3_RS18890 at 786.478 kb on + strand at 786.541 kb on + strand at 786.542 kb on - strand at 786.542 kb on - strand at 786.579 kb on + strand at 786.579 kb on + strand at 786.981 kb on + strand, within RALBFv3_RS18895 at 787.209 kb on + strand, within RALBFv3_RS18895 at 787.209 kb on + strand, within RALBFv3_RS18895 at 787.210 kb on - strand, within RALBFv3_RS18895
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C42L PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 784,110 + RALBFv3_RS18880 0.17 -2.1 784,111 - RALBFv3_RS18880 0.17 -0.3 784,502 - RALBFv3_RS18885 0.14 -0.1 784,502 - RALBFv3_RS18885 0.14 -0.4 784,502 - RALBFv3_RS18885 0.14 -0.1 784,511 - RALBFv3_RS18885 0.16 -0.8 784,511 - RALBFv3_RS18885 0.16 +0.3 784,511 - RALBFv3_RS18885 0.16 -0.8 784,598 - RALBFv3_RS18885 0.34 -0.7 784,771 + RALBFv3_RS18885 0.69 -0.3 785,442 + RALBFv3_RS18890 0.30 -1.8 785,443 - RALBFv3_RS18890 0.30 -0.2 785,499 + RALBFv3_RS18890 0.34 -1.6 785,874 + RALBFv3_RS18890 0.61 -0.7 785,875 - RALBFv3_RS18890 0.61 -1.4 785,875 - RALBFv3_RS18890 0.61 -1.6 785,875 - RALBFv3_RS18890 0.61 -1.4 785,875 - RALBFv3_RS18890 0.61 -0.4 785,875 - RALBFv3_RS18890 0.61 -1.0 785,875 - RALBFv3_RS18890 0.61 -0.8 786,015 + RALBFv3_RS18890 0.71 +1.8 786,016 - RALBFv3_RS18890 0.71 +1.0 786,016 - RALBFv3_RS18890 0.71 +0.2 786,016 - RALBFv3_RS18890 0.71 -1.4 786,019 - RALBFv3_RS18890 0.71 -0.3 786,076 - RALBFv3_RS18890 0.75 -2.4 786,156 + RALBFv3_RS18890 0.81 +1.8 786,478 + -0.0 786,541 + -1.4 786,542 - +1.4 786,542 - +1.3 786,579 + +0.1 786,579 + -1.9 786,981 + RALBFv3_RS18895 0.44 +0.5 787,209 + RALBFv3_RS18895 0.68 +0.2 787,209 + RALBFv3_RS18895 0.68 -0.8 787,210 - RALBFv3_RS18895 0.68 -2.1
Or see this region's nucleotide sequence