Experiment: Plant=Tomato_C42L PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS16320 and RALBFv3_RS16325 are separated by 69 nucleotides RALBFv3_RS16325 and RALBFv3_RS16330 are separated by 4 nucleotides
RALBFv3_RS16320: RALBFv3_RS16320 - LysR family transcriptional regulator, at 116,619 to 117,527
_RS16320
RALBFv3_RS16325: RALBFv3_RS16325 - mlrc harboring protein, at 117,597 to 119,081
_RS16325
RALBFv3_RS16330: RALBFv3_RS16330 - MFS transporter, at 119,086 to 120,387
_RS16330
Position (kb) 117
118
119
120 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 116.792 kb on - strand, within RALBFv3_RS16320 at 117.092 kb on - strand, within RALBFv3_RS16320 at 117.102 kb on + strand, within RALBFv3_RS16320 at 117.102 kb on + strand, within RALBFv3_RS16320 at 117.102 kb on + strand, within RALBFv3_RS16320 at 117.102 kb on + strand, within RALBFv3_RS16320 at 117.102 kb on + strand, within RALBFv3_RS16320 at 117.102 kb on + strand, within RALBFv3_RS16320 at 117.102 kb on + strand, within RALBFv3_RS16320 at 117.102 kb on + strand, within RALBFv3_RS16320 at 117.103 kb on - strand, within RALBFv3_RS16320 at 117.103 kb on - strand, within RALBFv3_RS16320 at 117.103 kb on - strand, within RALBFv3_RS16320 at 117.103 kb on - strand, within RALBFv3_RS16320 at 117.103 kb on - strand, within RALBFv3_RS16320 at 117.103 kb on - strand, within RALBFv3_RS16320 at 117.103 kb on - strand, within RALBFv3_RS16320 at 117.103 kb on - strand, within RALBFv3_RS16320 at 117.103 kb on - strand, within RALBFv3_RS16320 at 117.103 kb on - strand, within RALBFv3_RS16320 at 117.103 kb on - strand, within RALBFv3_RS16320 at 117.103 kb on - strand, within RALBFv3_RS16320 at 117.127 kb on - strand, within RALBFv3_RS16320 at 117.159 kb on + strand, within RALBFv3_RS16320 at 117.160 kb on - strand, within RALBFv3_RS16320 at 117.160 kb on - strand, within RALBFv3_RS16320 at 117.160 kb on - strand, within RALBFv3_RS16320 at 117.160 kb on - strand, within RALBFv3_RS16320 at 117.207 kb on + strand, within RALBFv3_RS16320 at 117.208 kb on - strand, within RALBFv3_RS16320 at 117.315 kb on + strand, within RALBFv3_RS16320 at 117.316 kb on - strand, within RALBFv3_RS16320 at 117.316 kb on - strand, within RALBFv3_RS16320 at 117.316 kb on - strand, within RALBFv3_RS16320 at 117.316 kb on - strand, within RALBFv3_RS16320 at 117.316 kb on - strand, within RALBFv3_RS16320 at 117.339 kb on + strand, within RALBFv3_RS16320 at 117.339 kb on + strand, within RALBFv3_RS16320 at 117.339 kb on + strand, within RALBFv3_RS16320 at 117.340 kb on - strand, within RALBFv3_RS16320 at 117.340 kb on - strand, within RALBFv3_RS16320 at 117.340 kb on - strand, within RALBFv3_RS16320 at 117.348 kb on - strand, within RALBFv3_RS16320 at 117.363 kb on + strand, within RALBFv3_RS16320 at 117.396 kb on + strand, within RALBFv3_RS16320 at 117.397 kb on - strand, within RALBFv3_RS16320 at 117.397 kb on - strand, within RALBFv3_RS16320 at 117.598 kb on + strand at 118.330 kb on + strand, within RALBFv3_RS16325 at 118.435 kb on + strand, within RALBFv3_RS16325 at 118.436 kb on - strand, within RALBFv3_RS16325 at 118.436 kb on - strand, within RALBFv3_RS16325 at 118.594 kb on + strand, within RALBFv3_RS16325 at 118.594 kb on + strand, within RALBFv3_RS16325 at 118.594 kb on + strand, within RALBFv3_RS16325 at 118.594 kb on + strand, within RALBFv3_RS16325 at 118.774 kb on + strand, within RALBFv3_RS16325 at 118.774 kb on + strand, within RALBFv3_RS16325 at 118.774 kb on + strand, within RALBFv3_RS16325 at 118.774 kb on + strand, within RALBFv3_RS16325 at 118.774 kb on + strand, within RALBFv3_RS16325 at 118.774 kb on + strand, within RALBFv3_RS16325 at 118.775 kb on - strand, within RALBFv3_RS16325 at 118.775 kb on - strand, within RALBFv3_RS16325 at 119.017 kb on + strand at 119.018 kb on - strand at 119.018 kb on - strand at 119.018 kb on - strand at 119.321 kb on + strand, within RALBFv3_RS16330 at 119.322 kb on - strand, within RALBFv3_RS16330 at 119.387 kb on + strand, within RALBFv3_RS16330 at 119.387 kb on + strand, within RALBFv3_RS16330 at 119.388 kb on - strand, within RALBFv3_RS16330 at 119.388 kb on - strand, within RALBFv3_RS16330 at 119.483 kb on + strand, within RALBFv3_RS16330 at 119.483 kb on + strand, within RALBFv3_RS16330 at 119.483 kb on + strand, within RALBFv3_RS16330 at 119.484 kb on - strand, within RALBFv3_RS16330 at 119.484 kb on - strand, within RALBFv3_RS16330 at 119.484 kb on - strand, within RALBFv3_RS16330 at 119.484 kb on - strand, within RALBFv3_RS16330 at 119.509 kb on - strand, within RALBFv3_RS16330 at 119.512 kb on + strand, within RALBFv3_RS16330 at 119.513 kb on - strand, within RALBFv3_RS16330 at 119.513 kb on - strand, within RALBFv3_RS16330 at 119.522 kb on + strand, within RALBFv3_RS16330 at 119.523 kb on - strand, within RALBFv3_RS16330 at 119.594 kb on + strand, within RALBFv3_RS16330 at 119.595 kb on - strand, within RALBFv3_RS16330 at 119.595 kb on - strand, within RALBFv3_RS16330 at 119.618 kb on + strand, within RALBFv3_RS16330 at 119.636 kb on + strand, within RALBFv3_RS16330 at 119.636 kb on + strand, within RALBFv3_RS16330 at 119.637 kb on - strand, within RALBFv3_RS16330 at 119.637 kb on - strand, within RALBFv3_RS16330 at 119.637 kb on - strand, within RALBFv3_RS16330 at 119.637 kb on - strand, within RALBFv3_RS16330 at 119.637 kb on - strand, within RALBFv3_RS16330 at 119.637 kb on - strand, within RALBFv3_RS16330 at 119.637 kb on - strand, within RALBFv3_RS16330 at 119.637 kb on - strand, within RALBFv3_RS16330 at 119.638 kb on - strand, within RALBFv3_RS16330 at 119.769 kb on - strand, within RALBFv3_RS16330 at 119.774 kb on + strand, within RALBFv3_RS16330 at 119.774 kb on + strand, within RALBFv3_RS16330 at 119.774 kb on + strand, within RALBFv3_RS16330 at 119.774 kb on + strand, within RALBFv3_RS16330 at 119.774 kb on + strand, within RALBFv3_RS16330 at 119.774 kb on + strand, within RALBFv3_RS16330 at 119.774 kb on + strand, within RALBFv3_RS16330 at 119.774 kb on + strand, within RALBFv3_RS16330 at 119.775 kb on - strand, within RALBFv3_RS16330 at 119.775 kb on - strand, within RALBFv3_RS16330 at 119.961 kb on - strand, within RALBFv3_RS16330 at 119.961 kb on - strand, within RALBFv3_RS16330 at 119.975 kb on + strand, within RALBFv3_RS16330 at 119.975 kb on + strand, within RALBFv3_RS16330 at 119.975 kb on + strand, within RALBFv3_RS16330 at 119.976 kb on - strand, within RALBFv3_RS16330 at 119.976 kb on - strand, within RALBFv3_RS16330 at 119.978 kb on + strand, within RALBFv3_RS16330 at 119.978 kb on + strand, within RALBFv3_RS16330 at 119.978 kb on + strand, within RALBFv3_RS16330 at 119.978 kb on + strand, within RALBFv3_RS16330 at 119.978 kb on + strand, within RALBFv3_RS16330 at 119.979 kb on - strand, within RALBFv3_RS16330 at 119.979 kb on - strand, within RALBFv3_RS16330 at 119.979 kb on - strand, within RALBFv3_RS16330 at 119.979 kb on - strand, within RALBFv3_RS16330 at 119.979 kb on - strand, within RALBFv3_RS16330 at 119.979 kb on - strand, within RALBFv3_RS16330 at 119.979 kb on - strand, within RALBFv3_RS16330 at 119.979 kb on - strand, within RALBFv3_RS16330 at 119.979 kb on - strand, within RALBFv3_RS16330 at 119.979 kb on - strand, within RALBFv3_RS16330 at 119.979 kb on - strand, within RALBFv3_RS16330 at 119.979 kb on - strand, within RALBFv3_RS16330 at 120.035 kb on + strand, within RALBFv3_RS16330 at 120.036 kb on - strand, within RALBFv3_RS16330 at 120.036 kb on - strand, within RALBFv3_RS16330 at 120.036 kb on - strand, within RALBFv3_RS16330
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C42L PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 116,792 - RALBFv3_RS16320 0.19 +2.4 117,092 - RALBFv3_RS16320 0.52 +1.4 117,102 + RALBFv3_RS16320 0.53 -2.0 117,102 + RALBFv3_RS16320 0.53 +1.4 117,102 + RALBFv3_RS16320 0.53 +1.4 117,102 + RALBFv3_RS16320 0.53 -0.2 117,102 + RALBFv3_RS16320 0.53 -1.4 117,102 + RALBFv3_RS16320 0.53 -1.8 117,102 + RALBFv3_RS16320 0.53 -0.2 117,102 + RALBFv3_RS16320 0.53 -1.6 117,103 - RALBFv3_RS16320 0.53 +1.7 117,103 - RALBFv3_RS16320 0.53 +2.4 117,103 - RALBFv3_RS16320 0.53 +1.0 117,103 - RALBFv3_RS16320 0.53 +1.7 117,103 - RALBFv3_RS16320 0.53 -1.9 117,103 - RALBFv3_RS16320 0.53 +1.2 117,103 - RALBFv3_RS16320 0.53 +0.4 117,103 - RALBFv3_RS16320 0.53 -0.8 117,103 - RALBFv3_RS16320 0.53 -0.1 117,103 - RALBFv3_RS16320 0.53 -0.9 117,103 - RALBFv3_RS16320 0.53 +1.4 117,103 - RALBFv3_RS16320 0.53 +1.4 117,127 - RALBFv3_RS16320 0.56 -0.5 117,159 + RALBFv3_RS16320 0.59 +0.4 117,160 - RALBFv3_RS16320 0.60 +2.4 117,160 - RALBFv3_RS16320 0.60 +2.4 117,160 - RALBFv3_RS16320 0.60 -1.4 117,160 - RALBFv3_RS16320 0.60 +1.2 117,207 + RALBFv3_RS16320 0.65 -0.6 117,208 - RALBFv3_RS16320 0.65 +0.4 117,315 + RALBFv3_RS16320 0.77 -0.6 117,316 - RALBFv3_RS16320 0.77 -1.8 117,316 - RALBFv3_RS16320 0.77 -0.3 117,316 - RALBFv3_RS16320 0.77 -0.6 117,316 - RALBFv3_RS16320 0.77 +1.2 117,316 - RALBFv3_RS16320 0.77 +1.4 117,339 + RALBFv3_RS16320 0.79 -0.6 117,339 + RALBFv3_RS16320 0.79 +1.2 117,339 + RALBFv3_RS16320 0.79 -1.8 117,340 - RALBFv3_RS16320 0.79 -0.1 117,340 - RALBFv3_RS16320 0.79 -1.2 117,340 - RALBFv3_RS16320 0.79 +0.4 117,348 - RALBFv3_RS16320 0.80 -0.6 117,363 + RALBFv3_RS16320 0.82 -1.6 117,396 + RALBFv3_RS16320 0.85 -1.0 117,397 - RALBFv3_RS16320 0.86 +0.6 117,397 - RALBFv3_RS16320 0.86 -1.4 117,598 + +1.7 118,330 + RALBFv3_RS16325 0.49 -0.9 118,435 + RALBFv3_RS16325 0.56 -0.2 118,436 - RALBFv3_RS16325 0.56 -0.4 118,436 - RALBFv3_RS16325 0.56 +0.4 118,594 + RALBFv3_RS16325 0.67 -0.4 118,594 + RALBFv3_RS16325 0.67 -0.1 118,594 + RALBFv3_RS16325 0.67 +0.1 118,594 + RALBFv3_RS16325 0.67 -0.2 118,774 + RALBFv3_RS16325 0.79 -0.1 118,774 + RALBFv3_RS16325 0.79 -0.5 118,774 + RALBFv3_RS16325 0.79 +0.2 118,774 + RALBFv3_RS16325 0.79 -0.6 118,774 + RALBFv3_RS16325 0.79 -0.2 118,774 + RALBFv3_RS16325 0.79 +0.8 118,775 - RALBFv3_RS16325 0.79 -0.2 118,775 - RALBFv3_RS16325 0.79 +1.5 119,017 + -0.4 119,018 - -0.8 119,018 - -1.2 119,018 - +1.1 119,321 + RALBFv3_RS16330 0.18 +2.9 119,322 - RALBFv3_RS16330 0.18 -1.5 119,387 + RALBFv3_RS16330 0.23 +2.1 119,387 + RALBFv3_RS16330 0.23 +0.4 119,388 - RALBFv3_RS16330 0.23 -0.5 119,388 - RALBFv3_RS16330 0.23 -0.4 119,483 + RALBFv3_RS16330 0.30 -0.3 119,483 + RALBFv3_RS16330 0.30 -2.8 119,483 + RALBFv3_RS16330 0.30 -1.0 119,484 - RALBFv3_RS16330 0.31 +0.5 119,484 - RALBFv3_RS16330 0.31 +1.9 119,484 - RALBFv3_RS16330 0.31 +0.1 119,484 - RALBFv3_RS16330 0.31 +0.5 119,509 - RALBFv3_RS16330 0.32 -1.4 119,512 + RALBFv3_RS16330 0.33 -1.7 119,513 - RALBFv3_RS16330 0.33 +0.7 119,513 - RALBFv3_RS16330 0.33 -0.1 119,522 + RALBFv3_RS16330 0.33 +0.4 119,523 - RALBFv3_RS16330 0.34 +1.2 119,594 + RALBFv3_RS16330 0.39 -0.7 119,595 - RALBFv3_RS16330 0.39 -1.6 119,595 - RALBFv3_RS16330 0.39 -0.3 119,618 + RALBFv3_RS16330 0.41 -0.2 119,636 + RALBFv3_RS16330 0.42 -0.3 119,636 + RALBFv3_RS16330 0.42 +0.4 119,637 - RALBFv3_RS16330 0.42 -0.2 119,637 - RALBFv3_RS16330 0.42 -0.9 119,637 - RALBFv3_RS16330 0.42 -2.5 119,637 - RALBFv3_RS16330 0.42 -1.0 119,637 - RALBFv3_RS16330 0.42 +1.0 119,637 - RALBFv3_RS16330 0.42 -0.6 119,637 - RALBFv3_RS16330 0.42 -0.7 119,637 - RALBFv3_RS16330 0.42 -0.5 119,638 - RALBFv3_RS16330 0.42 -1.0 119,769 - RALBFv3_RS16330 0.52 +0.2 119,774 + RALBFv3_RS16330 0.53 -1.4 119,774 + RALBFv3_RS16330 0.53 -0.7 119,774 + RALBFv3_RS16330 0.53 -1.3 119,774 + RALBFv3_RS16330 0.53 +1.2 119,774 + RALBFv3_RS16330 0.53 -0.3 119,774 + RALBFv3_RS16330 0.53 -0.8 119,774 + RALBFv3_RS16330 0.53 -0.0 119,774 + RALBFv3_RS16330 0.53 +0.3 119,775 - RALBFv3_RS16330 0.53 +0.3 119,775 - RALBFv3_RS16330 0.53 -0.6 119,961 - RALBFv3_RS16330 0.67 -1.6 119,961 - RALBFv3_RS16330 0.67 -0.1 119,975 + RALBFv3_RS16330 0.68 -1.0 119,975 + RALBFv3_RS16330 0.68 -0.7 119,975 + RALBFv3_RS16330 0.68 +0.8 119,976 - RALBFv3_RS16330 0.68 -1.3 119,976 - RALBFv3_RS16330 0.68 -0.9 119,978 + RALBFv3_RS16330 0.69 -2.8 119,978 + RALBFv3_RS16330 0.69 +1.4 119,978 + RALBFv3_RS16330 0.69 +1.0 119,978 + RALBFv3_RS16330 0.69 +0.4 119,978 + RALBFv3_RS16330 0.69 -2.2 119,979 - RALBFv3_RS16330 0.69 +1.8 119,979 - RALBFv3_RS16330 0.69 -2.0 119,979 - RALBFv3_RS16330 0.69 +0.3 119,979 - RALBFv3_RS16330 0.69 -0.8 119,979 - RALBFv3_RS16330 0.69 +1.6 119,979 - RALBFv3_RS16330 0.69 +0.2 119,979 - RALBFv3_RS16330 0.69 -0.6 119,979 - RALBFv3_RS16330 0.69 +0.7 119,979 - RALBFv3_RS16330 0.69 +1.5 119,979 - RALBFv3_RS16330 0.69 -0.0 119,979 - RALBFv3_RS16330 0.69 +3.1 119,979 - RALBFv3_RS16330 0.69 +0.7 120,035 + RALBFv3_RS16330 0.73 +0.8 120,036 - RALBFv3_RS16330 0.73 +0.7 120,036 - RALBFv3_RS16330 0.73 -0.2 120,036 - RALBFv3_RS16330 0.73 +1.2
Or see this region's nucleotide sequence