Experiment: KB with dihydrojasmonic, methyl ester 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4709 and Psyr_4710 are separated by 67 nucleotides Psyr_4710 and Psyr_4711 overlap by 4 nucleotides Psyr_4711 and Psyr_4712 are separated by 258 nucleotides
Psyr_4709: Psyr_4709 - Substrate-binding region of ABC-type glycine betaine transport system, at 5,580,137 to 5,581,084
_4709
Psyr_4710: Psyr_4710 - Binding-protein-dependent transport systems inner membrane component, at 5,581,152 to 5,581,997
_4710
Psyr_4711: Psyr_4711 - Glycine betaine/L-proline transport ATP-binding subunit, at 5,581,994 to 5,583,172
_4711
Psyr_4712: Psyr_4712 - serine hydroxymethyltransferase, at 5,583,431 to 5,584,684
_4712
Position (kb) 5581
5582
5583
5584 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5581.002 kb on + strand at 5581.002 kb on + strand at 5581.002 kb on + strand at 5581.082 kb on + strand at 5581.166 kb on + strand at 5581.166 kb on + strand at 5581.166 kb on + strand at 5581.185 kb on + strand at 5581.186 kb on - strand at 5581.186 kb on - strand at 5581.230 kb on + strand at 5581.230 kb on + strand at 5581.230 kb on + strand at 5581.231 kb on - strand at 5581.411 kb on - strand, within Psyr_4710 at 5581.518 kb on + strand, within Psyr_4710 at 5581.518 kb on + strand, within Psyr_4710 at 5581.518 kb on + strand, within Psyr_4710 at 5581.573 kb on - strand, within Psyr_4710 at 5581.669 kb on - strand, within Psyr_4710 at 5581.669 kb on - strand, within Psyr_4710 at 5581.765 kb on - strand, within Psyr_4710 at 5581.930 kb on + strand at 5581.930 kb on + strand at 5581.931 kb on - strand at 5581.931 kb on - strand at 5581.981 kb on + strand at 5581.982 kb on - strand at 5581.999 kb on + strand at 5581.999 kb on + strand at 5582.000 kb on - strand at 5582.019 kb on + strand at 5582.209 kb on + strand, within Psyr_4711 at 5582.210 kb on - strand, within Psyr_4711 at 5582.738 kb on + strand, within Psyr_4711 at 5582.739 kb on - strand, within Psyr_4711 at 5582.780 kb on + strand, within Psyr_4711 at 5582.780 kb on + strand, within Psyr_4711 at 5582.780 kb on + strand, within Psyr_4711 at 5582.780 kb on + strand, within Psyr_4711 at 5582.781 kb on - strand, within Psyr_4711 at 5582.781 kb on - strand, within Psyr_4711 at 5582.781 kb on - strand, within Psyr_4711 at 5582.781 kb on - strand, within Psyr_4711 at 5582.781 kb on - strand, within Psyr_4711 at 5582.781 kb on - strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.803 kb on + strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.804 kb on - strand, within Psyr_4711 at 5582.845 kb on + strand, within Psyr_4711 at 5583.106 kb on + strand at 5583.140 kb on + strand at 5583.277 kb on - strand at 5583.329 kb on + strand at 5583.542 kb on + strand at 5583.542 kb on + strand at 5583.542 kb on + strand at 5583.542 kb on + strand at 5583.542 kb on + strand at 5583.542 kb on + strand at 5583.543 kb on - strand at 5583.543 kb on - strand at 5583.543 kb on - strand at 5583.543 kb on - strand at 5583.543 kb on - strand at 5583.543 kb on - strand at 5583.593 kb on + strand, within Psyr_4712 at 5583.593 kb on + strand, within Psyr_4712 at 5583.593 kb on + strand, within Psyr_4712 at 5583.620 kb on + strand, within Psyr_4712 at 5583.624 kb on - strand, within Psyr_4712 at 5583.698 kb on + strand, within Psyr_4712 at 5583.699 kb on - strand, within Psyr_4712 at 5583.747 kb on - strand, within Psyr_4712 at 5583.848 kb on + strand, within Psyr_4712 at 5583.848 kb on + strand, within Psyr_4712 at 5583.848 kb on + strand, within Psyr_4712 at 5583.849 kb on - strand, within Psyr_4712 at 5583.849 kb on - strand, within Psyr_4712 at 5583.849 kb on - strand, within Psyr_4712 at 5583.849 kb on - strand, within Psyr_4712 at 5583.851 kb on - strand, within Psyr_4712 at 5583.962 kb on + strand, within Psyr_4712 at 5584.019 kb on + strand, within Psyr_4712 at 5584.020 kb on - strand, within Psyr_4712 at 5584.020 kb on - strand, within Psyr_4712 at 5584.089 kb on - strand, within Psyr_4712 at 5584.098 kb on + strand, within Psyr_4712 at 5584.098 kb on + strand, within Psyr_4712 at 5584.098 kb on + strand, within Psyr_4712 at 5584.098 kb on + strand, within Psyr_4712 at 5584.098 kb on + strand, within Psyr_4712 at 5584.098 kb on + strand, within Psyr_4712 at 5584.098 kb on + strand, within Psyr_4712 at 5584.098 kb on + strand, within Psyr_4712 at 5584.099 kb on - strand, within Psyr_4712 at 5584.099 kb on - strand, within Psyr_4712 at 5584.099 kb on - strand, within Psyr_4712 at 5584.099 kb on - strand, within Psyr_4712 at 5584.099 kb on - strand, within Psyr_4712
Per-strain Table
Position Strand Gene LocusTag Fraction KB with dihydrojasmonic, methyl ester 10 mM remove 5,581,002 + +0.7 5,581,002 + -1.6 5,581,002 + +2.4 5,581,082 + -0.4 5,581,166 + +1.3 5,581,166 + -0.9 5,581,166 + +1.7 5,581,185 + -0.6 5,581,186 - -0.1 5,581,186 - -0.0 5,581,230 + -2.0 5,581,230 + +0.2 5,581,230 + +0.5 5,581,231 - -1.4 5,581,411 - Psyr_4710 0.31 -0.3 5,581,518 + Psyr_4710 0.43 -0.3 5,581,518 + Psyr_4710 0.43 -1.0 5,581,518 + Psyr_4710 0.43 +1.1 5,581,573 - Psyr_4710 0.50 -0.1 5,581,669 - Psyr_4710 0.61 +0.5 5,581,669 - Psyr_4710 0.61 -0.5 5,581,765 - Psyr_4710 0.72 +0.5 5,581,930 + -0.6 5,581,930 + -0.3 5,581,931 - -0.1 5,581,931 - +0.4 5,581,981 + -0.8 5,581,982 - -0.2 5,581,999 + +0.6 5,581,999 + +0.3 5,582,000 - +0.4 5,582,019 + +0.3 5,582,209 + Psyr_4711 0.18 +1.5 5,582,210 - Psyr_4711 0.18 -1.4 5,582,738 + Psyr_4711 0.63 +0.9 5,582,739 - Psyr_4711 0.63 -1.5 5,582,780 + Psyr_4711 0.67 -2.5 5,582,780 + Psyr_4711 0.67 +1.2 5,582,780 + Psyr_4711 0.67 -0.3 5,582,780 + Psyr_4711 0.67 +0.0 5,582,781 - Psyr_4711 0.67 +0.9 5,582,781 - Psyr_4711 0.67 +0.5 5,582,781 - Psyr_4711 0.67 +0.8 5,582,781 - Psyr_4711 0.67 -0.3 5,582,781 - Psyr_4711 0.67 +0.3 5,582,781 - Psyr_4711 0.67 +0.1 5,582,803 + Psyr_4711 0.69 +0.1 5,582,803 + Psyr_4711 0.69 +0.7 5,582,803 + Psyr_4711 0.69 +0.4 5,582,803 + Psyr_4711 0.69 -0.4 5,582,803 + Psyr_4711 0.69 +0.8 5,582,803 + Psyr_4711 0.69 +0.4 5,582,803 + Psyr_4711 0.69 -0.9 5,582,803 + Psyr_4711 0.69 +0.5 5,582,804 - Psyr_4711 0.69 +2.2 5,582,804 - Psyr_4711 0.69 +0.9 5,582,804 - Psyr_4711 0.69 -0.5 5,582,804 - Psyr_4711 0.69 -0.9 5,582,804 - Psyr_4711 0.69 +1.2 5,582,804 - Psyr_4711 0.69 +1.6 5,582,804 - Psyr_4711 0.69 -1.1 5,582,804 - Psyr_4711 0.69 +0.5 5,582,804 - Psyr_4711 0.69 -0.6 5,582,804 - Psyr_4711 0.69 +1.7 5,582,845 + Psyr_4711 0.72 -0.1 5,583,106 + -0.0 5,583,140 + +1.6 5,583,277 - +0.0 5,583,329 + -2.8 5,583,542 + -0.7 5,583,542 + +0.7 5,583,542 + +0.1 5,583,542 + -0.3 5,583,542 + -0.5 5,583,542 + +1.6 5,583,543 - +0.8 5,583,543 - -2.0 5,583,543 - +0.9 5,583,543 - -0.4 5,583,543 - +2.8 5,583,543 - -0.6 5,583,593 + Psyr_4712 0.13 +0.5 5,583,593 + Psyr_4712 0.13 -0.7 5,583,593 + Psyr_4712 0.13 +3.4 5,583,620 + Psyr_4712 0.15 -1.5 5,583,624 - Psyr_4712 0.15 +0.0 5,583,698 + Psyr_4712 0.21 +2.2 5,583,699 - Psyr_4712 0.21 +0.9 5,583,747 - Psyr_4712 0.25 +0.5 5,583,848 + Psyr_4712 0.33 -0.6 5,583,848 + Psyr_4712 0.33 +0.3 5,583,848 + Psyr_4712 0.33 -0.2 5,583,849 - Psyr_4712 0.33 -1.8 5,583,849 - Psyr_4712 0.33 -0.5 5,583,849 - Psyr_4712 0.33 +0.8 5,583,849 - Psyr_4712 0.33 -0.4 5,583,851 - Psyr_4712 0.33 -0.6 5,583,962 + Psyr_4712 0.42 +1.0 5,584,019 + Psyr_4712 0.47 -3.1 5,584,020 - Psyr_4712 0.47 -0.9 5,584,020 - Psyr_4712 0.47 +0.5 5,584,089 - Psyr_4712 0.52 -1.0 5,584,098 + Psyr_4712 0.53 +0.5 5,584,098 + Psyr_4712 0.53 +1.2 5,584,098 + Psyr_4712 0.53 +0.4 5,584,098 + Psyr_4712 0.53 +0.8 5,584,098 + Psyr_4712 0.53 +1.4 5,584,098 + Psyr_4712 0.53 -0.3 5,584,098 + Psyr_4712 0.53 -1.4 5,584,098 + Psyr_4712 0.53 +0.4 5,584,099 - Psyr_4712 0.53 -0.9 5,584,099 - Psyr_4712 0.53 +0.4 5,584,099 - Psyr_4712 0.53 +0.4 5,584,099 - Psyr_4712 0.53 +1.2 5,584,099 - Psyr_4712 0.53 -1.6
Or see this region's nucleotide sequence