Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4416

Experiment: KB with dihydrojasmonic, methyl ester 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4414 and Psyr_4415 overlap by 1 nucleotidesPsyr_4415 and Psyr_4416 overlap by 4 nucleotidesPsyr_4416 and Psyr_4417 overlap by 8 nucleotides Psyr_4414: Psyr_4414 - precorrin-3 methyltransferase, at 5,277,564 to 5,279,267 _4414 Psyr_4415: Psyr_4415 - cobalt-factor II C20-methyltransferase / precorrin-2 C20-methyltransferase, at 5,279,267 to 5,280,001 _4415 Psyr_4416: Psyr_4416 - precorrin-8X methylmutase, at 5,279,998 to 5,280,624 _4416 Psyr_4417: Psyr_4417 - Ferredoxin--nitrite reductase, at 5,280,617 to 5,281,960 _4417 Position (kb) 5279 5280 5281Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5279.101 kb on + strandat 5279.102 kb on - strandat 5279.102 kb on - strandat 5279.134 kb on + strandat 5279.134 kb on + strandat 5279.135 kb on - strandat 5279.135 kb on - strandat 5279.135 kb on - strandat 5279.135 kb on - strandat 5279.297 kb on - strandat 5279.382 kb on + strand, within Psyr_4415at 5279.382 kb on + strand, within Psyr_4415at 5279.382 kb on + strand, within Psyr_4415at 5279.382 kb on + strand, within Psyr_4415at 5279.382 kb on + strand, within Psyr_4415at 5279.383 kb on - strand, within Psyr_4415at 5279.383 kb on - strand, within Psyr_4415at 5279.616 kb on + strand, within Psyr_4415at 5279.617 kb on - strand, within Psyr_4415at 5279.617 kb on - strand, within Psyr_4415at 5279.617 kb on - strand, within Psyr_4415at 5279.643 kb on + strand, within Psyr_4415at 5279.643 kb on + strand, within Psyr_4415at 5279.643 kb on + strand, within Psyr_4415at 5279.643 kb on + strand, within Psyr_4415at 5279.643 kb on + strand, within Psyr_4415at 5279.643 kb on + strand, within Psyr_4415at 5279.643 kb on + strand, within Psyr_4415at 5279.643 kb on + strand, within Psyr_4415at 5279.644 kb on - strand, within Psyr_4415at 5279.644 kb on - strand, within Psyr_4415at 5279.644 kb on - strand, within Psyr_4415at 5279.644 kb on - strand, within Psyr_4415at 5279.649 kb on + strand, within Psyr_4415at 5279.649 kb on + strand, within Psyr_4415at 5279.649 kb on + strand, within Psyr_4415at 5279.649 kb on + strand, within Psyr_4415at 5279.649 kb on + strand, within Psyr_4415at 5279.649 kb on + strand, within Psyr_4415at 5279.649 kb on + strand, within Psyr_4415at 5279.650 kb on - strand, within Psyr_4415at 5279.650 kb on - strand, within Psyr_4415at 5279.650 kb on - strand, within Psyr_4415at 5279.650 kb on - strand, within Psyr_4415at 5279.650 kb on - strand, within Psyr_4415at 5279.650 kb on - strand, within Psyr_4415at 5279.650 kb on - strand, within Psyr_4415at 5279.650 kb on - strand, within Psyr_4415at 5279.650 kb on - strand, within Psyr_4415at 5279.650 kb on - strand, within Psyr_4415at 5279.650 kb on - strand, within Psyr_4415at 5279.659 kb on - strand, within Psyr_4415at 5279.743 kb on - strand, within Psyr_4415at 5279.743 kb on - strand, within Psyr_4415at 5279.743 kb on - strand, within Psyr_4415at 5279.875 kb on + strand, within Psyr_4415at 5279.892 kb on + strand, within Psyr_4415at 5279.892 kb on + strand, within Psyr_4415at 5279.892 kb on + strand, within Psyr_4415at 5279.893 kb on - strand, within Psyr_4415at 5279.893 kb on - strand, within Psyr_4415at 5279.893 kb on - strand, within Psyr_4415at 5280.200 kb on + strand, within Psyr_4416at 5280.200 kb on + strand, within Psyr_4416at 5280.201 kb on - strand, within Psyr_4416at 5280.201 kb on - strand, within Psyr_4416at 5280.235 kb on + strand, within Psyr_4416at 5280.235 kb on + strand, within Psyr_4416at 5280.236 kb on - strand, within Psyr_4416at 5280.236 kb on - strand, within Psyr_4416at 5280.289 kb on - strand, within Psyr_4416at 5280.590 kb on + strandat 5280.590 kb on + strandat 5280.590 kb on + strandat 5280.592 kb on + strandat 5280.592 kb on + strandat 5280.592 kb on + strandat 5280.593 kb on - strandat 5280.593 kb on - strandat 5280.593 kb on - strandat 5280.593 kb on - strandat 5280.593 kb on - strandat 5280.614 kb on + strandat 5280.614 kb on + strandat 5280.614 kb on + strandat 5280.615 kb on - strandat 5280.615 kb on - strandat 5280.673 kb on + strandat 5280.674 kb on - strandat 5280.674 kb on - strandat 5280.674 kb on - strandat 5280.674 kb on - strandat 5280.676 kb on + strandat 5280.676 kb on + strandat 5280.677 kb on - strandat 5280.677 kb on - strandat 5280.677 kb on - strandat 5280.730 kb on - strandat 5280.777 kb on - strand, within Psyr_4417at 5280.820 kb on + strand, within Psyr_4417

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with dihydrojasmonic, methyl ester 10 mM
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5,279,101 + +0.1
5,279,102 - +2.4
5,279,102 - -0.0
5,279,134 + -0.7
5,279,134 + -0.6
5,279,135 - -1.1
5,279,135 - -0.5
5,279,135 - +0.1
5,279,135 - +1.3
5,279,297 - -1.1
5,279,382 + Psyr_4415 0.16 -0.3
5,279,382 + Psyr_4415 0.16 +0.3
5,279,382 + Psyr_4415 0.16 +1.9
5,279,382 + Psyr_4415 0.16 +1.4
5,279,382 + Psyr_4415 0.16 -0.3
5,279,383 - Psyr_4415 0.16 -0.7
5,279,383 - Psyr_4415 0.16 -1.5
5,279,616 + Psyr_4415 0.47 +0.0
5,279,617 - Psyr_4415 0.48 -0.5
5,279,617 - Psyr_4415 0.48 +0.1
5,279,617 - Psyr_4415 0.48 -2.1
5,279,643 + Psyr_4415 0.51 -0.4
5,279,643 + Psyr_4415 0.51 -0.3
5,279,643 + Psyr_4415 0.51 -1.6
5,279,643 + Psyr_4415 0.51 -0.6
5,279,643 + Psyr_4415 0.51 -2.2
5,279,643 + Psyr_4415 0.51 +0.1
5,279,643 + Psyr_4415 0.51 -0.3
5,279,643 + Psyr_4415 0.51 -1.1
5,279,644 - Psyr_4415 0.51 +0.4
5,279,644 - Psyr_4415 0.51 +1.1
5,279,644 - Psyr_4415 0.51 +1.2
5,279,644 - Psyr_4415 0.51 -1.6
5,279,649 + Psyr_4415 0.52 -0.7
5,279,649 + Psyr_4415 0.52 -2.6
5,279,649 + Psyr_4415 0.52 -0.1
5,279,649 + Psyr_4415 0.52 +0.3
5,279,649 + Psyr_4415 0.52 -1.2
5,279,649 + Psyr_4415 0.52 -2.4
5,279,649 + Psyr_4415 0.52 +2.4
5,279,650 - Psyr_4415 0.52 +1.3
5,279,650 - Psyr_4415 0.52 +0.6
5,279,650 - Psyr_4415 0.52 -0.0
5,279,650 - Psyr_4415 0.52 -3.3
5,279,650 - Psyr_4415 0.52 -0.7
5,279,650 - Psyr_4415 0.52 -0.2
5,279,650 - Psyr_4415 0.52 +0.9
5,279,650 - Psyr_4415 0.52 +0.3
5,279,650 - Psyr_4415 0.52 +0.1
5,279,650 - Psyr_4415 0.52 +1.5
5,279,650 - Psyr_4415 0.52 -0.5
5,279,659 - Psyr_4415 0.53 +1.4
5,279,743 - Psyr_4415 0.65 -0.4
5,279,743 - Psyr_4415 0.65 -0.7
5,279,743 - Psyr_4415 0.65 +2.1
5,279,875 + Psyr_4415 0.83 +0.1
5,279,892 + Psyr_4415 0.85 -2.1
5,279,892 + Psyr_4415 0.85 +0.5
5,279,892 + Psyr_4415 0.85 -2.2
5,279,893 - Psyr_4415 0.85 +0.2
5,279,893 - Psyr_4415 0.85 -1.1
5,279,893 - Psyr_4415 0.85 -0.9
5,280,200 + Psyr_4416 0.32 -0.6
5,280,200 + Psyr_4416 0.32 -2.2
5,280,201 - Psyr_4416 0.32 +0.8
5,280,201 - Psyr_4416 0.32 -0.1
5,280,235 + Psyr_4416 0.38 -1.0
5,280,235 + Psyr_4416 0.38 -1.9
5,280,236 - Psyr_4416 0.38 +0.1
5,280,236 - Psyr_4416 0.38 -0.9
5,280,289 - Psyr_4416 0.46 -0.6
5,280,590 + +0.3
5,280,590 + +0.8
5,280,590 + -1.7
5,280,592 + -2.7
5,280,592 + +1.4
5,280,592 + +1.2
5,280,593 - -0.6
5,280,593 - +0.6
5,280,593 - -0.8
5,280,593 - -0.7
5,280,593 - +1.2
5,280,614 + -0.9
5,280,614 + -0.5
5,280,614 + -0.2
5,280,615 - -1.7
5,280,615 - -3.0
5,280,673 + -2.4
5,280,674 - +0.8
5,280,674 - +0.4
5,280,674 - +0.8
5,280,674 - +2.6
5,280,676 + -0.0
5,280,676 + +1.8
5,280,677 - -0.5
5,280,677 - -0.4
5,280,677 - +0.7
5,280,730 - -1.1
5,280,777 - Psyr_4417 0.12 +1.1
5,280,820 + Psyr_4417 0.15 -1.2

Or see this region's nucleotide sequence