Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3938

Experiment: KB with dihydrojasmonic, methyl ester 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3936 and Psyr_3937 are separated by 27 nucleotidesPsyr_3937 and Psyr_3938 are separated by 76 nucleotidesPsyr_3938 and Psyr_3939 are separated by 260 nucleotides Psyr_3936: Psyr_3936 - General substrate transporter:Major facilitator superfamily, at 4,680,987 to 4,682,327 _3936 Psyr_3937: Psyr_3937 - Polysaccharide deacetylase, at 4,682,355 to 4,683,236 _3937 Psyr_3938: Psyr_3938 - Amidase, at 4,683,313 to 4,684,686 _3938 Psyr_3939: Psyr_3939 - transcriptional regulator, GntR family, at 4,684,947 to 4,686,026 _3939 Position (kb) 4683 4684 4685Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4682.313 kb on - strandat 4682.313 kb on - strandat 4682.313 kb on - strandat 4682.313 kb on - strandat 4682.317 kb on + strandat 4682.317 kb on + strandat 4682.318 kb on - strandat 4682.648 kb on - strand, within Psyr_3937at 4682.764 kb on + strand, within Psyr_3937at 4682.764 kb on + strand, within Psyr_3937at 4682.764 kb on + strand, within Psyr_3937at 4682.764 kb on + strand, within Psyr_3937at 4682.764 kb on + strand, within Psyr_3937at 4682.764 kb on + strand, within Psyr_3937at 4682.764 kb on + strand, within Psyr_3937at 4682.764 kb on + strand, within Psyr_3937at 4682.764 kb on + strand, within Psyr_3937at 4682.765 kb on - strand, within Psyr_3937at 4682.765 kb on - strand, within Psyr_3937at 4682.765 kb on - strand, within Psyr_3937at 4682.767 kb on + strand, within Psyr_3937at 4682.768 kb on - strand, within Psyr_3937at 4682.803 kb on + strand, within Psyr_3937at 4682.803 kb on + strand, within Psyr_3937at 4682.803 kb on + strand, within Psyr_3937at 4682.804 kb on - strand, within Psyr_3937at 4682.804 kb on - strand, within Psyr_3937at 4682.804 kb on - strand, within Psyr_3937at 4682.804 kb on - strand, within Psyr_3937at 4682.804 kb on - strand, within Psyr_3937at 4682.804 kb on - strand, within Psyr_3937at 4682.804 kb on - strand, within Psyr_3937at 4682.869 kb on + strand, within Psyr_3937at 4682.870 kb on - strand, within Psyr_3937at 4682.870 kb on - strand, within Psyr_3937at 4682.974 kb on + strand, within Psyr_3937at 4682.974 kb on + strand, within Psyr_3937at 4683.065 kb on + strand, within Psyr_3937at 4683.065 kb on + strand, within Psyr_3937at 4683.065 kb on + strand, within Psyr_3937at 4683.065 kb on + strand, within Psyr_3937at 4683.066 kb on - strand, within Psyr_3937at 4683.080 kb on - strand, within Psyr_3937at 4683.169 kb on + strandat 4683.169 kb on + strandat 4683.170 kb on - strandat 4683.170 kb on - strandat 4683.170 kb on - strandat 4683.325 kb on + strandat 4683.326 kb on - strandat 4683.629 kb on + strand, within Psyr_3938at 4683.630 kb on - strand, within Psyr_3938at 4683.630 kb on - strand, within Psyr_3938at 4683.953 kb on - strand, within Psyr_3938at 4684.137 kb on + strand, within Psyr_3938at 4684.137 kb on + strand, within Psyr_3938at 4684.137 kb on + strand, within Psyr_3938at 4684.138 kb on - strand, within Psyr_3938at 4684.138 kb on - strand, within Psyr_3938at 4684.138 kb on - strand, within Psyr_3938at 4684.820 kb on + strandat 4684.820 kb on + strandat 4684.820 kb on + strandat 4684.821 kb on - strandat 4684.821 kb on - strandat 4684.893 kb on + strandat 4684.894 kb on - strandat 4684.894 kb on - strandat 4684.894 kb on - strandat 4684.898 kb on + strandat 4684.899 kb on - strandat 4684.935 kb on - strandat 4684.958 kb on + strandat 4684.958 kb on + strandat 4684.958 kb on + strandat 4685.024 kb on + strandat 4685.025 kb on - strandat 4685.360 kb on + strand, within Psyr_3939at 4685.360 kb on + strand, within Psyr_3939at 4685.360 kb on + strand, within Psyr_3939at 4685.360 kb on + strand, within Psyr_3939at 4685.360 kb on + strand, within Psyr_3939at 4685.360 kb on + strand, within Psyr_3939at 4685.360 kb on + strand, within Psyr_3939at 4685.361 kb on - strand, within Psyr_3939at 4685.361 kb on - strand, within Psyr_3939at 4685.361 kb on - strand, within Psyr_3939at 4685.361 kb on - strand, within Psyr_3939at 4685.361 kb on - strand, within Psyr_3939at 4685.396 kb on + strand, within Psyr_3939at 4685.571 kb on + strand, within Psyr_3939

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with dihydrojasmonic, methyl ester 10 mM
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4,682,313 - -1.3
4,682,313 - +1.7
4,682,313 - -0.0
4,682,313 - -1.6
4,682,317 + -1.6
4,682,317 + +0.3
4,682,318 - +0.8
4,682,648 - Psyr_3937 0.33 -1.7
4,682,764 + Psyr_3937 0.46 +0.6
4,682,764 + Psyr_3937 0.46 +1.5
4,682,764 + Psyr_3937 0.46 +0.9
4,682,764 + Psyr_3937 0.46 -1.9
4,682,764 + Psyr_3937 0.46 -0.3
4,682,764 + Psyr_3937 0.46 +0.6
4,682,764 + Psyr_3937 0.46 +0.3
4,682,764 + Psyr_3937 0.46 -0.7
4,682,764 + Psyr_3937 0.46 -0.5
4,682,765 - Psyr_3937 0.46 +0.3
4,682,765 - Psyr_3937 0.46 -0.3
4,682,765 - Psyr_3937 0.46 -0.2
4,682,767 + Psyr_3937 0.47 -0.6
4,682,768 - Psyr_3937 0.47 -0.5
4,682,803 + Psyr_3937 0.51 +0.8
4,682,803 + Psyr_3937 0.51 +0.5
4,682,803 + Psyr_3937 0.51 +1.5
4,682,804 - Psyr_3937 0.51 +0.5
4,682,804 - Psyr_3937 0.51 -1.6
4,682,804 - Psyr_3937 0.51 +0.3
4,682,804 - Psyr_3937 0.51 +1.2
4,682,804 - Psyr_3937 0.51 +1.5
4,682,804 - Psyr_3937 0.51 +0.2
4,682,804 - Psyr_3937 0.51 +0.5
4,682,869 + Psyr_3937 0.58 +1.6
4,682,870 - Psyr_3937 0.58 +0.5
4,682,870 - Psyr_3937 0.58 +0.5
4,682,974 + Psyr_3937 0.70 +1.4
4,682,974 + Psyr_3937 0.70 +0.6
4,683,065 + Psyr_3937 0.80 +1.5
4,683,065 + Psyr_3937 0.80 -0.4
4,683,065 + Psyr_3937 0.80 -1.8
4,683,065 + Psyr_3937 0.80 -0.5
4,683,066 - Psyr_3937 0.81 +0.9
4,683,080 - Psyr_3937 0.82 -0.7
4,683,169 + -1.0
4,683,169 + +0.4
4,683,170 - -0.2
4,683,170 - -0.0
4,683,170 - +0.2
4,683,325 + -0.4
4,683,326 - +0.2
4,683,629 + Psyr_3938 0.23 -0.0
4,683,630 - Psyr_3938 0.23 -0.8
4,683,630 - Psyr_3938 0.23 -3.3
4,683,953 - Psyr_3938 0.47 -0.6
4,684,137 + Psyr_3938 0.60 -1.3
4,684,137 + Psyr_3938 0.60 -1.0
4,684,137 + Psyr_3938 0.60 +0.1
4,684,138 - Psyr_3938 0.60 -0.1
4,684,138 - Psyr_3938 0.60 -1.5
4,684,138 - Psyr_3938 0.60 +0.5
4,684,820 + -0.7
4,684,820 + +0.3
4,684,820 + -0.3
4,684,821 - -1.3
4,684,821 - -0.6
4,684,893 + +0.0
4,684,894 - +0.3
4,684,894 - -1.1
4,684,894 - +0.2
4,684,898 + +0.3
4,684,899 - +2.0
4,684,935 - -0.1
4,684,958 + -0.4
4,684,958 + -1.0
4,684,958 + -0.5
4,685,024 + -0.5
4,685,025 - -1.4
4,685,360 + Psyr_3939 0.38 +0.4
4,685,360 + Psyr_3939 0.38 +0.8
4,685,360 + Psyr_3939 0.38 -0.0
4,685,360 + Psyr_3939 0.38 +0.7
4,685,360 + Psyr_3939 0.38 +1.4
4,685,360 + Psyr_3939 0.38 +0.5
4,685,360 + Psyr_3939 0.38 +1.7
4,685,361 - Psyr_3939 0.38 +0.7
4,685,361 - Psyr_3939 0.38 -0.8
4,685,361 - Psyr_3939 0.38 -1.2
4,685,361 - Psyr_3939 0.38 +0.2
4,685,361 - Psyr_3939 0.38 +0.1
4,685,396 + Psyr_3939 0.42 -2.3
4,685,571 + Psyr_3939 0.58 +0.1

Or see this region's nucleotide sequence