Experiment: KB with dihydrojasmonic, methyl ester 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3819 and Psyr_3820 are separated by 443 nucleotides Psyr_3820 and Psyr_3821 are separated by 78 nucleotides Psyr_3821 and Psyr_3822 are separated by 1 nucleotides
Psyr_3819: Psyr_3819 - Protein of unknown function DUF1349, at 4,544,258 to 4,544,833
_3819
Psyr_3820: Psyr_3820 - conserved domain protein, at 4,545,277 to 4,545,822
_3820
Psyr_3821: Psyr_3821 - Short-chain dehydrogenase/reductase SDR, at 4,545,901 to 4,546,635
_3821
Psyr_3822: Psyr_3822 - Protein of unknown function DUF6, at 4,546,637 to 4,547,515
_3822
Position (kb) 4545
4546 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4544.360 kb on + strand, within Psyr_3819 at 4544.360 kb on + strand, within Psyr_3819 at 4544.360 kb on + strand, within Psyr_3819 at 4544.361 kb on - strand, within Psyr_3819 at 4544.366 kb on - strand, within Psyr_3819 at 4544.366 kb on - strand, within Psyr_3819 at 4544.367 kb on + strand, within Psyr_3819 at 4544.367 kb on + strand, within Psyr_3819 at 4544.368 kb on - strand, within Psyr_3819 at 4544.445 kb on - strand, within Psyr_3819 at 4544.498 kb on + strand, within Psyr_3819 at 4544.499 kb on - strand, within Psyr_3819 at 4544.499 kb on - strand, within Psyr_3819 at 4544.499 kb on - strand, within Psyr_3819 at 4544.499 kb on - strand, within Psyr_3819 at 4544.629 kb on - strand, within Psyr_3819 at 4544.725 kb on - strand, within Psyr_3819 at 4544.877 kb on + strand at 4544.877 kb on + strand at 4544.877 kb on + strand at 4544.877 kb on + strand at 4544.877 kb on + strand at 4544.878 kb on - strand at 4544.878 kb on - strand at 4544.878 kb on - strand at 4544.878 kb on - strand at 4544.878 kb on - strand at 4544.878 kb on - strand at 4544.885 kb on - strand at 4544.894 kb on + strand at 4544.894 kb on + strand at 4544.895 kb on - strand at 4544.908 kb on + strand at 4544.909 kb on - strand at 4544.962 kb on + strand at 4544.990 kb on - strand at 4545.092 kb on - strand at 4545.129 kb on + strand at 4545.140 kb on + strand at 4545.140 kb on + strand at 4545.140 kb on + strand at 4545.140 kb on + strand at 4545.141 kb on - strand at 4545.147 kb on + strand at 4545.147 kb on + strand at 4545.148 kb on - strand at 4545.553 kb on + strand, within Psyr_3820 at 4545.553 kb on + strand, within Psyr_3820 at 4545.554 kb on - strand, within Psyr_3820 at 4545.554 kb on - strand, within Psyr_3820 at 4545.554 kb on - strand, within Psyr_3820 at 4545.554 kb on - strand, within Psyr_3820 at 4545.554 kb on - strand, within Psyr_3820 at 4545.554 kb on - strand, within Psyr_3820 at 4546.210 kb on + strand, within Psyr_3821 at 4546.210 kb on + strand, within Psyr_3821 at 4546.211 kb on - strand, within Psyr_3821 at 4546.363 kb on + strand, within Psyr_3821 at 4546.464 kb on - strand, within Psyr_3821 at 4546.468 kb on - strand, within Psyr_3821 at 4546.561 kb on + strand, within Psyr_3821 at 4546.561 kb on + strand, within Psyr_3821 at 4546.561 kb on + strand, within Psyr_3821 at 4546.561 kb on + strand, within Psyr_3821 at 4546.561 kb on + strand, within Psyr_3821 at 4546.561 kb on + strand, within Psyr_3821 at 4546.561 kb on + strand, within Psyr_3821 at 4546.562 kb on - strand at 4546.562 kb on - strand at 4546.562 kb on - strand at 4546.562 kb on - strand at 4546.562 kb on - strand at 4546.562 kb on - strand at 4546.588 kb on + strand at 4546.588 kb on + strand at 4546.589 kb on - strand at 4546.589 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with dihydrojasmonic, methyl ester 10 mM remove 4,544,360 + Psyr_3819 0.18 +3.0 4,544,360 + Psyr_3819 0.18 +1.4 4,544,360 + Psyr_3819 0.18 +1.0 4,544,361 - Psyr_3819 0.18 -1.7 4,544,366 - Psyr_3819 0.19 -1.0 4,544,366 - Psyr_3819 0.19 +0.1 4,544,367 + Psyr_3819 0.19 +1.2 4,544,367 + Psyr_3819 0.19 +0.0 4,544,368 - Psyr_3819 0.19 -0.2 4,544,445 - Psyr_3819 0.32 -0.8 4,544,498 + Psyr_3819 0.42 +1.2 4,544,499 - Psyr_3819 0.42 -2.5 4,544,499 - Psyr_3819 0.42 +0.0 4,544,499 - Psyr_3819 0.42 +0.1 4,544,499 - Psyr_3819 0.42 +2.0 4,544,629 - Psyr_3819 0.64 +1.9 4,544,725 - Psyr_3819 0.81 +0.5 4,544,877 + +0.1 4,544,877 + -2.3 4,544,877 + -2.1 4,544,877 + +1.2 4,544,877 + -0.2 4,544,878 - +1.6 4,544,878 - -0.7 4,544,878 - -0.1 4,544,878 - +1.6 4,544,878 - +0.2 4,544,878 - -1.1 4,544,885 - +0.1 4,544,894 + -2.6 4,544,894 + -1.9 4,544,895 - -0.7 4,544,908 + +0.7 4,544,909 - -1.3 4,544,962 + -0.9 4,544,990 - +0.4 4,545,092 - +0.3 4,545,129 + +0.1 4,545,140 + -0.4 4,545,140 + +0.6 4,545,140 + +1.0 4,545,140 + +0.2 4,545,141 - +0.2 4,545,147 + -0.4 4,545,147 + -1.8 4,545,148 - +0.2 4,545,553 + Psyr_3820 0.51 -1.3 4,545,553 + Psyr_3820 0.51 -0.5 4,545,554 - Psyr_3820 0.51 -0.8 4,545,554 - Psyr_3820 0.51 -1.2 4,545,554 - Psyr_3820 0.51 -0.3 4,545,554 - Psyr_3820 0.51 +0.9 4,545,554 - Psyr_3820 0.51 -0.5 4,545,554 - Psyr_3820 0.51 -2.6 4,546,210 + Psyr_3821 0.42 +0.4 4,546,210 + Psyr_3821 0.42 -1.0 4,546,211 - Psyr_3821 0.42 +0.6 4,546,363 + Psyr_3821 0.63 -0.2 4,546,464 - Psyr_3821 0.77 +1.0 4,546,468 - Psyr_3821 0.77 -0.9 4,546,561 + Psyr_3821 0.90 -0.6 4,546,561 + Psyr_3821 0.90 +1.5 4,546,561 + Psyr_3821 0.90 +1.4 4,546,561 + Psyr_3821 0.90 -0.8 4,546,561 + Psyr_3821 0.90 +1.1 4,546,561 + Psyr_3821 0.90 -0.5 4,546,561 + Psyr_3821 0.90 -1.3 4,546,562 - -0.7 4,546,562 - -0.8 4,546,562 - +0.6 4,546,562 - -0.4 4,546,562 - -0.3 4,546,562 - -0.5 4,546,588 + -0.6 4,546,588 + +1.0 4,546,589 - -1.7 4,546,589 - -2.0
Or see this region's nucleotide sequence