Experiment: KB with dihydrojasmonic, methyl ester 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3443 and Psyr_3444 are separated by 25 nucleotides Psyr_3444 and Psyr_3445 overlap by 1 nucleotides Psyr_3445 and Psyr_3446 are separated by 0 nucleotides Psyr_3446 and Psyr_3447 are separated by 61 nucleotides
Psyr_3443: Psyr_3443 - Flagellar biosynthesis protein FliQ, at 4,107,991 to 4,108,260
_3443
Psyr_3444: Psyr_3444 - Flagellar transport protein FliP, at 4,108,286 to 4,109,038
_3444
Psyr_3445: Psyr_3445 - Flagellar biosynthesis protein, FliO, at 4,109,038 to 4,109,478
_3445
Psyr_3446: Psyr_3446 - Surface presentation of antigens (SPOA) protein, at 4,109,479 to 4,109,937
_3446
Psyr_3447: Psyr_3447 - Flagellar motor switch protein FliM, at 4,109,999 to 4,110,967
_3447
Position (kb) 4109
4110 Strain fitness (log2 ratio) -2
-1
0
1 at 4108.045 kb on + strand, within Psyr_3443 at 4108.046 kb on - strand, within Psyr_3443 at 4108.046 kb on - strand, within Psyr_3443 at 4108.246 kb on + strand at 4108.289 kb on + strand at 4108.289 kb on + strand at 4108.290 kb on - strand at 4108.290 kb on - strand at 4108.522 kb on + strand, within Psyr_3444 at 4109.016 kb on - strand at 4109.016 kb on - strand at 4109.242 kb on + strand, within Psyr_3445 at 4109.243 kb on - strand, within Psyr_3445 at 4109.243 kb on - strand, within Psyr_3445 at 4109.670 kb on + strand, within Psyr_3446 at 4109.671 kb on - strand, within Psyr_3446 at 4109.920 kb on - strand at 4109.967 kb on + strand at 4110.023 kb on + strand at 4110.024 kb on - strand at 4110.024 kb on - strand at 4110.024 kb on - strand at 4110.077 kb on + strand at 4110.377 kb on + strand, within Psyr_3447 at 4110.435 kb on + strand, within Psyr_3447
Per-strain Table
Position Strand Gene LocusTag Fraction KB with dihydrojasmonic, methyl ester 10 mM remove 4,108,045 + Psyr_3443 0.20 +0.2 4,108,046 - Psyr_3443 0.20 +1.6 4,108,046 - Psyr_3443 0.20 -0.0 4,108,246 + -0.5 4,108,289 + -0.1 4,108,289 + +0.2 4,108,290 - -0.2 4,108,290 - +0.9 4,108,522 + Psyr_3444 0.31 +1.2 4,109,016 - +0.1 4,109,016 - +1.1 4,109,242 + Psyr_3445 0.46 -2.0 4,109,243 - Psyr_3445 0.46 -0.5 4,109,243 - Psyr_3445 0.46 -0.6 4,109,670 + Psyr_3446 0.42 +0.3 4,109,671 - Psyr_3446 0.42 +0.4 4,109,920 - -0.1 4,109,967 + -1.0 4,110,023 + -1.2 4,110,024 - -0.1 4,110,024 - -0.3 4,110,024 - -0.7 4,110,077 + -0.7 4,110,377 + Psyr_3447 0.39 -1.9 4,110,435 + Psyr_3447 0.45 -1.6
Or see this region's nucleotide sequence