Experiment: KB with dihydrojasmonic, methyl ester 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2582 and Psyr_2583 are separated by 350 nucleotides Psyr_2583 and Psyr_2584 are separated by 196 nucleotides
Psyr_2582: Psyr_2582 - TonB-dependent siderophore receptor, at 3,023,541 to 3,025,949
_2582
Psyr_2583: Psyr_2583 - diaminobutyrate aminotransferase apoenzyme, at 3,026,300 to 3,027,676
_2583
Psyr_2584: Psyr_2584 - IucA/IucC, at 3,027,873 to 3,029,657
_2584
Position (kb)
3026
3027
3028 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3025.386 kb on + strand, within Psyr_2582 at 3025.387 kb on - strand, within Psyr_2582 at 3025.387 kb on - strand, within Psyr_2582 at 3025.420 kb on + strand, within Psyr_2582 at 3025.443 kb on + strand, within Psyr_2582 at 3025.469 kb on - strand, within Psyr_2582 at 3025.563 kb on + strand, within Psyr_2582 at 3025.563 kb on + strand, within Psyr_2582 at 3025.563 kb on + strand, within Psyr_2582 at 3025.564 kb on - strand, within Psyr_2582 at 3025.564 kb on - strand, within Psyr_2582 at 3025.564 kb on - strand, within Psyr_2582 at 3025.564 kb on - strand, within Psyr_2582 at 3025.635 kb on + strand, within Psyr_2582 at 3025.635 kb on + strand, within Psyr_2582 at 3025.635 kb on + strand, within Psyr_2582 at 3025.636 kb on - strand, within Psyr_2582 at 3025.636 kb on - strand, within Psyr_2582 at 3025.636 kb on - strand, within Psyr_2582 at 3025.707 kb on + strand, within Psyr_2582 at 3025.708 kb on - strand, within Psyr_2582 at 3025.723 kb on - strand at 3025.774 kb on + strand at 3025.793 kb on + strand at 3025.793 kb on + strand at 3025.851 kb on + strand at 3025.851 kb on + strand at 3025.852 kb on - strand at 3025.852 kb on - strand at 3025.852 kb on - strand at 3025.852 kb on - strand at 3025.852 kb on - strand at 3025.852 kb on - strand at 3025.852 kb on - strand at 3025.854 kb on + strand at 3025.920 kb on + strand at 3025.920 kb on + strand at 3025.920 kb on + strand at 3025.921 kb on - strand at 3025.921 kb on - strand at 3025.921 kb on - strand at 3025.921 kb on - strand at 3025.921 kb on - strand at 3025.983 kb on + strand at 3025.983 kb on + strand at 3025.983 kb on + strand at 3025.983 kb on + strand at 3025.983 kb on + strand at 3025.984 kb on - strand at 3025.984 kb on - strand at 3025.984 kb on - strand at 3025.984 kb on - strand at 3025.984 kb on - strand at 3025.984 kb on - strand at 3025.984 kb on - strand at 3025.984 kb on - strand at 3025.984 kb on - strand at 3025.984 kb on - strand at 3025.985 kb on + strand at 3025.985 kb on + strand at 3025.985 kb on + strand at 3025.985 kb on + strand at 3025.986 kb on - strand at 3025.987 kb on + strand at 3025.987 kb on + strand at 3026.032 kb on + strand at 3026.035 kb on + strand at 3026.035 kb on + strand at 3026.036 kb on - strand at 3026.166 kb on + strand at 3026.167 kb on - strand at 3026.167 kb on - strand at 3026.326 kb on + strand at 3026.327 kb on - strand at 3026.329 kb on + strand at 3026.329 kb on + strand at 3026.330 kb on - strand at 3026.330 kb on - strand at 3026.330 kb on - strand at 3026.354 kb on + strand at 3026.354 kb on + strand at 3026.354 kb on + strand at 3026.389 kb on - strand at 3026.389 kb on - strand at 3026.397 kb on - strand at 3026.469 kb on - strand, within Psyr_2583 at 3026.652 kb on - strand, within Psyr_2583 at 3026.867 kb on + strand, within Psyr_2583 at 3026.868 kb on - strand, within Psyr_2583 at 3026.868 kb on - strand, within Psyr_2583 at 3026.918 kb on + strand, within Psyr_2583 at 3026.919 kb on - strand, within Psyr_2583 at 3026.921 kb on + strand, within Psyr_2583 at 3026.921 kb on + strand, within Psyr_2583 at 3026.921 kb on + strand, within Psyr_2583 at 3026.922 kb on - strand, within Psyr_2583 at 3026.922 kb on - strand, within Psyr_2583 at 3027.541 kb on - strand at 3027.666 kb on + strand at 3027.682 kb on - strand at 3027.685 kb on + strand at 3027.685 kb on + strand at 3027.685 kb on + strand at 3027.686 kb on - strand at 3027.686 kb on - strand at 3027.689 kb on - strand at 3027.689 kb on - strand at 3027.838 kb on + strand at 3027.879 kb on - strand at 3027.987 kb on + strand at 3027.987 kb on + strand at 3027.987 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with dihydrojasmonic, methyl ester 10 mM remove 3,025,386 + Psyr_2582 0.77 +0.2 3,025,387 - Psyr_2582 0.77 -1.2 3,025,387 - Psyr_2582 0.77 -1.1 3,025,420 + Psyr_2582 0.78 -0.1 3,025,443 + Psyr_2582 0.79 -1.4 3,025,469 - Psyr_2582 0.80 -3.2 3,025,563 + Psyr_2582 0.84 -1.2 3,025,563 + Psyr_2582 0.84 +0.6 3,025,563 + Psyr_2582 0.84 -1.3 3,025,564 - Psyr_2582 0.84 +0.2 3,025,564 - Psyr_2582 0.84 -3.7 3,025,564 - Psyr_2582 0.84 -0.4 3,025,564 - Psyr_2582 0.84 -1.4 3,025,635 + Psyr_2582 0.87 +0.5 3,025,635 + Psyr_2582 0.87 -1.8 3,025,635 + Psyr_2582 0.87 -2.4 3,025,636 - Psyr_2582 0.87 +0.6 3,025,636 - Psyr_2582 0.87 -0.6 3,025,636 - Psyr_2582 0.87 -2.1 3,025,707 + Psyr_2582 0.90 -1.3 3,025,708 - Psyr_2582 0.90 -0.7 3,025,723 - +0.0 3,025,774 + +0.4 3,025,793 + -0.0 3,025,793 + -0.9 3,025,851 + -0.8 3,025,851 + -0.5 3,025,852 - -1.1 3,025,852 - -2.3 3,025,852 - -0.2 3,025,852 - -1.7 3,025,852 - -2.7 3,025,852 - -2.2 3,025,852 - +0.4 3,025,854 + -2.2 3,025,920 + -3.4 3,025,920 + +1.2 3,025,920 + +0.9 3,025,921 - -1.8 3,025,921 - +0.4 3,025,921 - -0.8 3,025,921 - -2.0 3,025,921 - +0.0 3,025,983 + +0.3 3,025,983 + -0.4 3,025,983 + +0.3 3,025,983 + -0.3 3,025,983 + +0.4 3,025,984 - -1.8 3,025,984 - -1.6 3,025,984 - -0.8 3,025,984 - +0.6 3,025,984 - -0.2 3,025,984 - -0.4 3,025,984 - +0.7 3,025,984 - -1.4 3,025,984 - +1.1 3,025,984 - -1.8 3,025,985 + -0.4 3,025,985 + +0.4 3,025,985 + -1.0 3,025,985 + -0.8 3,025,986 - -0.6 3,025,987 + -0.1 3,025,987 + -1.0 3,026,032 + -0.4 3,026,035 + -1.3 3,026,035 + -0.2 3,026,036 - -0.6 3,026,166 + -1.4 3,026,167 - +0.8 3,026,167 - -1.6 3,026,326 + +0.1 3,026,327 - -1.1 3,026,329 + +0.2 3,026,329 + -1.6 3,026,330 - +2.2 3,026,330 - +1.1 3,026,330 - -1.1 3,026,354 + -1.9 3,026,354 + -1.6 3,026,354 + -0.4 3,026,389 - -1.1 3,026,389 - -1.5 3,026,397 - +0.7 3,026,469 - Psyr_2583 0.12 -0.8 3,026,652 - Psyr_2583 0.26 +1.6 3,026,867 + Psyr_2583 0.41 -0.9 3,026,868 - Psyr_2583 0.41 -0.1 3,026,868 - Psyr_2583 0.41 -0.6 3,026,918 + Psyr_2583 0.45 -1.2 3,026,919 - Psyr_2583 0.45 -0.7 3,026,921 + Psyr_2583 0.45 -0.0 3,026,921 + Psyr_2583 0.45 +0.9 3,026,921 + Psyr_2583 0.45 -2.9 3,026,922 - Psyr_2583 0.45 -0.7 3,026,922 - Psyr_2583 0.45 +0.3 3,027,541 - -1.2 3,027,666 + +1.2 3,027,682 - -0.5 3,027,685 + -0.8 3,027,685 + +1.4 3,027,685 + +0.6 3,027,686 - +1.2 3,027,686 - -0.9 3,027,689 - -0.8 3,027,689 - +0.6 3,027,838 + +0.7 3,027,879 - +0.1 3,027,987 + +0.2 3,027,987 + +1.8 3,027,987 + -0.3
Or see this region's nucleotide sequence