Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2583

Experiment: KB with dihydrojasmonic, methyl ester 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2582 and Psyr_2583 are separated by 350 nucleotidesPsyr_2583 and Psyr_2584 are separated by 196 nucleotides Psyr_2582: Psyr_2582 - TonB-dependent siderophore receptor, at 3,023,541 to 3,025,949 _2582 Psyr_2583: Psyr_2583 - diaminobutyrate aminotransferase apoenzyme, at 3,026,300 to 3,027,676 _2583 Psyr_2584: Psyr_2584 - IucA/IucC, at 3,027,873 to 3,029,657 _2584 Position (kb) 3026 3027 3028Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3025.386 kb on + strand, within Psyr_2582at 3025.387 kb on - strand, within Psyr_2582at 3025.387 kb on - strand, within Psyr_2582at 3025.420 kb on + strand, within Psyr_2582at 3025.443 kb on + strand, within Psyr_2582at 3025.469 kb on - strand, within Psyr_2582at 3025.563 kb on + strand, within Psyr_2582at 3025.563 kb on + strand, within Psyr_2582at 3025.563 kb on + strand, within Psyr_2582at 3025.564 kb on - strand, within Psyr_2582at 3025.564 kb on - strand, within Psyr_2582at 3025.564 kb on - strand, within Psyr_2582at 3025.564 kb on - strand, within Psyr_2582at 3025.635 kb on + strand, within Psyr_2582at 3025.635 kb on + strand, within Psyr_2582at 3025.635 kb on + strand, within Psyr_2582at 3025.636 kb on - strand, within Psyr_2582at 3025.636 kb on - strand, within Psyr_2582at 3025.636 kb on - strand, within Psyr_2582at 3025.707 kb on + strand, within Psyr_2582at 3025.708 kb on - strand, within Psyr_2582at 3025.723 kb on - strandat 3025.774 kb on + strandat 3025.793 kb on + strandat 3025.793 kb on + strandat 3025.851 kb on + strandat 3025.851 kb on + strandat 3025.852 kb on - strandat 3025.852 kb on - strandat 3025.852 kb on - strandat 3025.852 kb on - strandat 3025.852 kb on - strandat 3025.852 kb on - strandat 3025.852 kb on - strandat 3025.854 kb on + strandat 3025.920 kb on + strandat 3025.920 kb on + strandat 3025.920 kb on + strandat 3025.921 kb on - strandat 3025.921 kb on - strandat 3025.921 kb on - strandat 3025.921 kb on - strandat 3025.921 kb on - strandat 3025.983 kb on + strandat 3025.983 kb on + strandat 3025.983 kb on + strandat 3025.983 kb on + strandat 3025.983 kb on + strandat 3025.984 kb on - strandat 3025.984 kb on - strandat 3025.984 kb on - strandat 3025.984 kb on - strandat 3025.984 kb on - strandat 3025.984 kb on - strandat 3025.984 kb on - strandat 3025.984 kb on - strandat 3025.984 kb on - strandat 3025.984 kb on - strandat 3025.985 kb on + strandat 3025.985 kb on + strandat 3025.985 kb on + strandat 3025.985 kb on + strandat 3025.986 kb on - strandat 3025.987 kb on + strandat 3025.987 kb on + strandat 3026.032 kb on + strandat 3026.035 kb on + strandat 3026.035 kb on + strandat 3026.036 kb on - strandat 3026.166 kb on + strandat 3026.167 kb on - strandat 3026.167 kb on - strandat 3026.326 kb on + strandat 3026.327 kb on - strandat 3026.329 kb on + strandat 3026.329 kb on + strandat 3026.330 kb on - strandat 3026.330 kb on - strandat 3026.330 kb on - strandat 3026.354 kb on + strandat 3026.354 kb on + strandat 3026.354 kb on + strandat 3026.389 kb on - strandat 3026.389 kb on - strandat 3026.397 kb on - strandat 3026.469 kb on - strand, within Psyr_2583at 3026.652 kb on - strand, within Psyr_2583at 3026.867 kb on + strand, within Psyr_2583at 3026.868 kb on - strand, within Psyr_2583at 3026.868 kb on - strand, within Psyr_2583at 3026.918 kb on + strand, within Psyr_2583at 3026.919 kb on - strand, within Psyr_2583at 3026.921 kb on + strand, within Psyr_2583at 3026.921 kb on + strand, within Psyr_2583at 3026.921 kb on + strand, within Psyr_2583at 3026.922 kb on - strand, within Psyr_2583at 3026.922 kb on - strand, within Psyr_2583at 3027.541 kb on - strandat 3027.666 kb on + strandat 3027.682 kb on - strandat 3027.685 kb on + strandat 3027.685 kb on + strandat 3027.685 kb on + strandat 3027.686 kb on - strandat 3027.686 kb on - strandat 3027.689 kb on - strandat 3027.689 kb on - strandat 3027.838 kb on + strandat 3027.879 kb on - strandat 3027.987 kb on + strandat 3027.987 kb on + strandat 3027.987 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with dihydrojasmonic, methyl ester 10 mM
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3,025,386 + Psyr_2582 0.77 +0.2
3,025,387 - Psyr_2582 0.77 -1.2
3,025,387 - Psyr_2582 0.77 -1.1
3,025,420 + Psyr_2582 0.78 -0.1
3,025,443 + Psyr_2582 0.79 -1.4
3,025,469 - Psyr_2582 0.80 -3.2
3,025,563 + Psyr_2582 0.84 -1.2
3,025,563 + Psyr_2582 0.84 +0.6
3,025,563 + Psyr_2582 0.84 -1.3
3,025,564 - Psyr_2582 0.84 +0.2
3,025,564 - Psyr_2582 0.84 -3.7
3,025,564 - Psyr_2582 0.84 -0.4
3,025,564 - Psyr_2582 0.84 -1.4
3,025,635 + Psyr_2582 0.87 +0.5
3,025,635 + Psyr_2582 0.87 -1.8
3,025,635 + Psyr_2582 0.87 -2.4
3,025,636 - Psyr_2582 0.87 +0.6
3,025,636 - Psyr_2582 0.87 -0.6
3,025,636 - Psyr_2582 0.87 -2.1
3,025,707 + Psyr_2582 0.90 -1.3
3,025,708 - Psyr_2582 0.90 -0.7
3,025,723 - +0.0
3,025,774 + +0.4
3,025,793 + -0.0
3,025,793 + -0.9
3,025,851 + -0.8
3,025,851 + -0.5
3,025,852 - -1.1
3,025,852 - -2.3
3,025,852 - -0.2
3,025,852 - -1.7
3,025,852 - -2.7
3,025,852 - -2.2
3,025,852 - +0.4
3,025,854 + -2.2
3,025,920 + -3.4
3,025,920 + +1.2
3,025,920 + +0.9
3,025,921 - -1.8
3,025,921 - +0.4
3,025,921 - -0.8
3,025,921 - -2.0
3,025,921 - +0.0
3,025,983 + +0.3
3,025,983 + -0.4
3,025,983 + +0.3
3,025,983 + -0.3
3,025,983 + +0.4
3,025,984 - -1.8
3,025,984 - -1.6
3,025,984 - -0.8
3,025,984 - +0.6
3,025,984 - -0.2
3,025,984 - -0.4
3,025,984 - +0.7
3,025,984 - -1.4
3,025,984 - +1.1
3,025,984 - -1.8
3,025,985 + -0.4
3,025,985 + +0.4
3,025,985 + -1.0
3,025,985 + -0.8
3,025,986 - -0.6
3,025,987 + -0.1
3,025,987 + -1.0
3,026,032 + -0.4
3,026,035 + -1.3
3,026,035 + -0.2
3,026,036 - -0.6
3,026,166 + -1.4
3,026,167 - +0.8
3,026,167 - -1.6
3,026,326 + +0.1
3,026,327 - -1.1
3,026,329 + +0.2
3,026,329 + -1.6
3,026,330 - +2.2
3,026,330 - +1.1
3,026,330 - -1.1
3,026,354 + -1.9
3,026,354 + -1.6
3,026,354 + -0.4
3,026,389 - -1.1
3,026,389 - -1.5
3,026,397 - +0.7
3,026,469 - Psyr_2583 0.12 -0.8
3,026,652 - Psyr_2583 0.26 +1.6
3,026,867 + Psyr_2583 0.41 -0.9
3,026,868 - Psyr_2583 0.41 -0.1
3,026,868 - Psyr_2583 0.41 -0.6
3,026,918 + Psyr_2583 0.45 -1.2
3,026,919 - Psyr_2583 0.45 -0.7
3,026,921 + Psyr_2583 0.45 -0.0
3,026,921 + Psyr_2583 0.45 +0.9
3,026,921 + Psyr_2583 0.45 -2.9
3,026,922 - Psyr_2583 0.45 -0.7
3,026,922 - Psyr_2583 0.45 +0.3
3,027,541 - -1.2
3,027,666 + +1.2
3,027,682 - -0.5
3,027,685 + -0.8
3,027,685 + +1.4
3,027,685 + +0.6
3,027,686 - +1.2
3,027,686 - -0.9
3,027,689 - -0.8
3,027,689 - +0.6
3,027,838 + +0.7
3,027,879 - +0.1
3,027,987 + +0.2
3,027,987 + +1.8
3,027,987 + -0.3

Or see this region's nucleotide sequence