Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2572

Experiment: KB with dihydrojasmonic, methyl ester 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2571 and Psyr_2572 are separated by 278 nucleotidesPsyr_2572 and Psyr_2573 are separated by 34 nucleotides Psyr_2571: Psyr_2571 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 2,984,833 to 2,986,320 _2571 Psyr_2572: Psyr_2572 - ribose-5-phosphate isomerase, at 2,986,599 to 2,987,060 _2572 Psyr_2573: Psyr_2573 - transcriptional regulator, DeoR family, at 2,987,095 to 2,988,108 _2573 Position (kb) 2986 2987 2988Strain fitness (log2 ratio) -2 -1 0 1 2at 2985.642 kb on + strand, within Psyr_2571at 2985.643 kb on - strand, within Psyr_2571at 2985.683 kb on + strand, within Psyr_2571at 2985.725 kb on - strand, within Psyr_2571at 2985.728 kb on + strand, within Psyr_2571at 2985.728 kb on + strand, within Psyr_2571at 2985.728 kb on + strand, within Psyr_2571at 2985.728 kb on + strand, within Psyr_2571at 2985.728 kb on + strand, within Psyr_2571at 2985.728 kb on + strand, within Psyr_2571at 2985.728 kb on + strand, within Psyr_2571at 2985.728 kb on + strand, within Psyr_2571at 2985.728 kb on + strand, within Psyr_2571at 2985.728 kb on + strand, within Psyr_2571at 2985.728 kb on + strand, within Psyr_2571at 2985.728 kb on + strand, within Psyr_2571at 2985.728 kb on + strand, within Psyr_2571at 2985.728 kb on + strand, within Psyr_2571at 2985.728 kb on + strand, within Psyr_2571at 2985.729 kb on - strand, within Psyr_2571at 2985.729 kb on - strand, within Psyr_2571at 2985.729 kb on - strand, within Psyr_2571at 2985.729 kb on - strand, within Psyr_2571at 2985.729 kb on - strand, within Psyr_2571at 2985.729 kb on - strand, within Psyr_2571at 2985.874 kb on + strand, within Psyr_2571at 2985.875 kb on - strand, within Psyr_2571at 2985.875 kb on - strand, within Psyr_2571at 2986.274 kb on + strandat 2986.275 kb on - strandat 2986.348 kb on - strandat 2986.348 kb on - strandat 2986.350 kb on + strandat 2986.351 kb on - strandat 2986.354 kb on + strandat 2986.354 kb on + strandat 2986.378 kb on + strandat 2986.421 kb on + strandat 2986.422 kb on - strandat 2986.422 kb on - strandat 2986.481 kb on + strandat 2986.816 kb on + strand, within Psyr_2572at 2986.874 kb on + strand, within Psyr_2572at 2986.878 kb on + strand, within Psyr_2572at 2986.879 kb on - strand, within Psyr_2572at 2987.059 kb on - strandat 2987.192 kb on - strandat 2987.300 kb on + strand, within Psyr_2573at 2987.444 kb on - strand, within Psyr_2573at 2987.590 kb on + strand, within Psyr_2573at 2987.591 kb on - strand, within Psyr_2573at 2987.694 kb on + strand, within Psyr_2573at 2987.970 kb on - strand, within Psyr_2573

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with dihydrojasmonic, methyl ester 10 mM
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2,985,642 + Psyr_2571 0.54 -0.5
2,985,643 - Psyr_2571 0.54 +0.2
2,985,683 + Psyr_2571 0.57 -0.1
2,985,725 - Psyr_2571 0.60 +1.5
2,985,728 + Psyr_2571 0.60 +2.5
2,985,728 + Psyr_2571 0.60 +0.1
2,985,728 + Psyr_2571 0.60 +0.0
2,985,728 + Psyr_2571 0.60 -0.8
2,985,728 + Psyr_2571 0.60 +0.5
2,985,728 + Psyr_2571 0.60 +0.2
2,985,728 + Psyr_2571 0.60 -0.5
2,985,728 + Psyr_2571 0.60 -2.5
2,985,728 + Psyr_2571 0.60 -1.0
2,985,728 + Psyr_2571 0.60 -1.7
2,985,728 + Psyr_2571 0.60 -1.8
2,985,728 + Psyr_2571 0.60 -1.3
2,985,728 + Psyr_2571 0.60 +1.2
2,985,728 + Psyr_2571 0.60 -0.3
2,985,728 + Psyr_2571 0.60 +0.5
2,985,729 - Psyr_2571 0.60 -0.6
2,985,729 - Psyr_2571 0.60 -0.0
2,985,729 - Psyr_2571 0.60 -1.6
2,985,729 - Psyr_2571 0.60 +0.8
2,985,729 - Psyr_2571 0.60 -0.6
2,985,729 - Psyr_2571 0.60 +2.5
2,985,874 + Psyr_2571 0.70 +0.2
2,985,875 - Psyr_2571 0.70 -0.7
2,985,875 - Psyr_2571 0.70 -0.7
2,986,274 + -1.0
2,986,275 - -1.2
2,986,348 - +0.8
2,986,348 - -0.2
2,986,350 + -0.2
2,986,351 - -1.1
2,986,354 + +0.5
2,986,354 + -0.4
2,986,378 + +0.5
2,986,421 + -0.8
2,986,422 - -0.5
2,986,422 - -0.4
2,986,481 + -0.0
2,986,816 + Psyr_2572 0.47 -2.0
2,986,874 + Psyr_2572 0.60 -0.1
2,986,878 + Psyr_2572 0.60 -1.0
2,986,879 - Psyr_2572 0.61 +1.2
2,987,059 - +0.4
2,987,192 - -0.5
2,987,300 + Psyr_2573 0.20 +1.2
2,987,444 - Psyr_2573 0.34 +0.8
2,987,590 + Psyr_2573 0.49 +0.9
2,987,591 - Psyr_2573 0.49 +0.3
2,987,694 + Psyr_2573 0.59 -1.4
2,987,970 - Psyr_2573 0.86 +0.6

Or see this region's nucleotide sequence