Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21135

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21130 and ABZR87_RS21135 are separated by 347 nucleotidesABZR87_RS21135 and ABZR87_RS21140 are separated by 49 nucleotides ABZR87_RS21130: ABZR87_RS21130 - RNA polymerase sigma factor, at 1,124,749 to 1,126,032 _RS21130 ABZR87_RS21135: ABZR87_RS21135 - FMN reductase, at 1,126,380 to 1,126,961 _RS21135 ABZR87_RS21140: ABZR87_RS21140 - dimethylsulfone monooxygenase SfnG, at 1,127,011 to 1,128,174 _RS21140 Position (kb) 1126 1127Strain fitness (log2 ratio) -1 0 1at 1125.586 kb on + strand, within ABZR87_RS21130at 1125.587 kb on - strand, within ABZR87_RS21130at 1125.656 kb on - strand, within ABZR87_RS21130at 1125.656 kb on - strand, within ABZR87_RS21130at 1125.739 kb on + strand, within ABZR87_RS21130at 1125.739 kb on + strand, within ABZR87_RS21130at 1125.740 kb on - strand, within ABZR87_RS21130at 1125.740 kb on - strand, within ABZR87_RS21130at 1125.812 kb on - strand, within ABZR87_RS21130at 1125.843 kb on + strand, within ABZR87_RS21130at 1125.843 kb on + strand, within ABZR87_RS21130at 1125.844 kb on - strand, within ABZR87_RS21130at 1125.946 kb on + strandat 1125.946 kb on + strandat 1126.200 kb on + strandat 1126.201 kb on - strandat 1126.216 kb on - strandat 1126.216 kb on - strandat 1126.239 kb on + strandat 1126.240 kb on - strandat 1126.241 kb on + strandat 1126.242 kb on - strandat 1126.257 kb on + strandat 1126.257 kb on + strandat 1126.258 kb on - strandat 1126.261 kb on + strandat 1126.262 kb on - strandat 1126.262 kb on - strandat 1126.262 kb on - strandat 1126.444 kb on + strand, within ABZR87_RS21135at 1126.445 kb on - strand, within ABZR87_RS21135at 1126.545 kb on + strand, within ABZR87_RS21135at 1126.641 kb on + strand, within ABZR87_RS21135at 1126.642 kb on - strand, within ABZR87_RS21135at 1126.812 kb on + strand, within ABZR87_RS21135at 1126.813 kb on - strand, within ABZR87_RS21135at 1126.813 kb on - strand, within ABZR87_RS21135at 1127.037 kb on + strandat 1127.038 kb on - strandat 1127.122 kb on + strandat 1127.123 kb on - strandat 1127.123 kb on - strandat 1127.168 kb on - strand, within ABZR87_RS21140at 1127.201 kb on - strand, within ABZR87_RS21140at 1127.441 kb on - strand, within ABZR87_RS21140at 1127.533 kb on + strand, within ABZR87_RS21140

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,125,586 + ABZR87_RS21130 0.65 +0.1
1,125,587 - ABZR87_RS21130 0.65 -0.5
1,125,656 - ABZR87_RS21130 0.71 -0.3
1,125,656 - ABZR87_RS21130 0.71 -1.0
1,125,739 + ABZR87_RS21130 0.77 +0.3
1,125,739 + ABZR87_RS21130 0.77 +0.2
1,125,740 - ABZR87_RS21130 0.77 +0.0
1,125,740 - ABZR87_RS21130 0.77 +0.2
1,125,812 - ABZR87_RS21130 0.83 +0.1
1,125,843 + ABZR87_RS21130 0.85 +0.1
1,125,843 + ABZR87_RS21130 0.85 +1.4
1,125,844 - ABZR87_RS21130 0.85 +0.2
1,125,946 + -1.4
1,125,946 + -0.5
1,126,200 + +0.1
1,126,201 - +0.2
1,126,216 - -0.6
1,126,216 - -0.8
1,126,239 + +0.6
1,126,240 - -0.9
1,126,241 + +1.1
1,126,242 - -0.7
1,126,257 + +0.7
1,126,257 + -0.2
1,126,258 - +1.0
1,126,261 + -0.7
1,126,262 - -0.0
1,126,262 - -0.3
1,126,262 - -0.4
1,126,444 + ABZR87_RS21135 0.11 -0.3
1,126,445 - ABZR87_RS21135 0.11 -0.4
1,126,545 + ABZR87_RS21135 0.28 -0.4
1,126,641 + ABZR87_RS21135 0.45 +0.5
1,126,642 - ABZR87_RS21135 0.45 +0.1
1,126,812 + ABZR87_RS21135 0.74 -0.4
1,126,813 - ABZR87_RS21135 0.74 +0.2
1,126,813 - ABZR87_RS21135 0.74 -0.3
1,127,037 + +0.0
1,127,038 - +0.5
1,127,122 + +0.4
1,127,123 - +0.0
1,127,123 - +0.9
1,127,168 - ABZR87_RS21140 0.13 -0.8
1,127,201 - ABZR87_RS21140 0.16 -0.6
1,127,441 - ABZR87_RS21140 0.37 -0.3
1,127,533 + ABZR87_RS21140 0.45 +0.2

Or see this region's nucleotide sequence