Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19125

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19120 and ABZR87_RS19125 are separated by 328 nucleotidesABZR87_RS19125 and ABZR87_RS19130 are separated by 269 nucleotides ABZR87_RS19120: ABZR87_RS19120 - sugar kinase, at 650,588 to 651,514 _RS19120 ABZR87_RS19125: ABZR87_RS19125 - penicillin acylase family protein, at 651,843 to 654,272 _RS19125 ABZR87_RS19130: ABZR87_RS19130 - ATP-binding protein, at 654,542 to 656,437 _RS19130 Position (kb) 651 652 653 654 655Strain fitness (log2 ratio) -2 -1 0 1 2at 650.843 kb on + strand, within ABZR87_RS19120at 650.843 kb on + strand, within ABZR87_RS19120at 650.883 kb on - strand, within ABZR87_RS19120at 650.883 kb on - strand, within ABZR87_RS19120at 651.165 kb on + strand, within ABZR87_RS19120at 651.165 kb on + strand, within ABZR87_RS19120at 651.165 kb on + strand, within ABZR87_RS19120at 651.165 kb on + strand, within ABZR87_RS19120at 651.165 kb on + strand, within ABZR87_RS19120at 651.166 kb on - strand, within ABZR87_RS19120at 651.166 kb on - strand, within ABZR87_RS19120at 651.208 kb on + strand, within ABZR87_RS19120at 651.266 kb on + strand, within ABZR87_RS19120at 651.267 kb on - strand, within ABZR87_RS19120at 651.267 kb on - strand, within ABZR87_RS19120at 651.307 kb on + strand, within ABZR87_RS19120at 651.308 kb on - strand, within ABZR87_RS19120at 651.308 kb on - strand, within ABZR87_RS19120at 651.408 kb on - strand, within ABZR87_RS19120at 651.433 kb on + strandat 651.443 kb on + strandat 651.446 kb on - strandat 651.446 kb on - strandat 651.446 kb on - strandat 651.446 kb on - strandat 651.727 kb on + strandat 651.844 kb on + strandat 651.845 kb on - strandat 651.845 kb on - strandat 651.905 kb on - strandat 651.905 kb on - strandat 651.919 kb on + strandat 651.920 kb on - strandat 651.920 kb on - strandat 651.920 kb on - strandat 651.920 kb on - strandat 651.955 kb on + strandat 652.081 kb on + strandat 652.103 kb on - strand, within ABZR87_RS19125at 652.103 kb on - strand, within ABZR87_RS19125at 652.251 kb on - strand, within ABZR87_RS19125at 652.331 kb on + strand, within ABZR87_RS19125at 652.331 kb on + strand, within ABZR87_RS19125at 652.332 kb on - strand, within ABZR87_RS19125at 652.335 kb on + strand, within ABZR87_RS19125at 652.361 kb on + strand, within ABZR87_RS19125at 652.362 kb on - strand, within ABZR87_RS19125at 652.362 kb on - strand, within ABZR87_RS19125at 652.420 kb on - strand, within ABZR87_RS19125at 652.655 kb on + strand, within ABZR87_RS19125at 652.656 kb on - strand, within ABZR87_RS19125at 652.727 kb on - strand, within ABZR87_RS19125at 652.727 kb on - strand, within ABZR87_RS19125at 652.733 kb on - strand, within ABZR87_RS19125at 652.772 kb on - strand, within ABZR87_RS19125at 652.789 kb on + strand, within ABZR87_RS19125at 652.789 kb on + strand, within ABZR87_RS19125at 652.789 kb on + strand, within ABZR87_RS19125at 652.789 kb on + strand, within ABZR87_RS19125at 652.789 kb on + strand, within ABZR87_RS19125at 652.790 kb on - strand, within ABZR87_RS19125at 652.790 kb on - strand, within ABZR87_RS19125at 652.790 kb on - strand, within ABZR87_RS19125at 652.933 kb on + strand, within ABZR87_RS19125at 652.933 kb on + strand, within ABZR87_RS19125at 652.933 kb on + strand, within ABZR87_RS19125at 652.934 kb on - strand, within ABZR87_RS19125at 652.934 kb on - strand, within ABZR87_RS19125at 652.934 kb on - strand, within ABZR87_RS19125at 652.934 kb on - strand, within ABZR87_RS19125at 653.069 kb on - strand, within ABZR87_RS19125at 653.095 kb on + strand, within ABZR87_RS19125at 653.096 kb on - strand, within ABZR87_RS19125at 653.096 kb on - strand, within ABZR87_RS19125at 653.210 kb on - strand, within ABZR87_RS19125at 653.245 kb on + strand, within ABZR87_RS19125at 653.245 kb on + strand, within ABZR87_RS19125at 653.245 kb on + strand, within ABZR87_RS19125at 653.245 kb on + strand, within ABZR87_RS19125at 653.246 kb on - strand, within ABZR87_RS19125at 653.246 kb on - strand, within ABZR87_RS19125at 653.246 kb on - strand, within ABZR87_RS19125at 653.246 kb on - strand, within ABZR87_RS19125at 653.301 kb on - strand, within ABZR87_RS19125at 653.301 kb on - strand, within ABZR87_RS19125at 653.402 kb on - strand, within ABZR87_RS19125at 653.797 kb on + strand, within ABZR87_RS19125at 653.797 kb on + strand, within ABZR87_RS19125at 653.798 kb on - strand, within ABZR87_RS19125at 653.857 kb on + strand, within ABZR87_RS19125at 653.857 kb on + strand, within ABZR87_RS19125at 653.857 kb on + strand, within ABZR87_RS19125at 653.858 kb on - strand, within ABZR87_RS19125at 653.858 kb on - strand, within ABZR87_RS19125at 653.858 kb on - strand, within ABZR87_RS19125at 653.911 kb on + strand, within ABZR87_RS19125at 653.912 kb on - strand, within ABZR87_RS19125at 653.945 kb on - strand, within ABZR87_RS19125at 653.980 kb on + strand, within ABZR87_RS19125at 653.981 kb on - strand, within ABZR87_RS19125at 654.106 kb on + strandat 654.106 kb on + strandat 654.106 kb on + strandat 654.106 kb on + strandat 654.107 kb on - strandat 654.107 kb on - strandat 654.107 kb on - strandat 654.107 kb on - strandat 654.107 kb on - strandat 654.156 kb on + strandat 654.165 kb on + strandat 654.347 kb on - strandat 654.347 kb on - strandat 654.427 kb on + strandat 654.428 kb on - strandat 654.428 kb on - strandat 654.466 kb on + strandat 654.466 kb on + strandat 654.851 kb on + strand, within ABZR87_RS19130at 654.873 kb on + strand, within ABZR87_RS19130at 654.874 kb on - strand, within ABZR87_RS19130at 655.186 kb on + strand, within ABZR87_RS19130at 655.187 kb on - strand, within ABZR87_RS19130

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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650,843 + ABZR87_RS19120 0.28 +0.6
650,843 + ABZR87_RS19120 0.28 +0.1
650,883 - ABZR87_RS19120 0.32 -0.1
650,883 - ABZR87_RS19120 0.32 +0.1
651,165 + ABZR87_RS19120 0.62 +0.7
651,165 + ABZR87_RS19120 0.62 +0.6
651,165 + ABZR87_RS19120 0.62 -1.3
651,165 + ABZR87_RS19120 0.62 +0.5
651,165 + ABZR87_RS19120 0.62 +1.0
651,166 - ABZR87_RS19120 0.62 +0.3
651,166 - ABZR87_RS19120 0.62 +0.6
651,208 + ABZR87_RS19120 0.67 -2.7
651,266 + ABZR87_RS19120 0.73 +0.3
651,267 - ABZR87_RS19120 0.73 +0.5
651,267 - ABZR87_RS19120 0.73 -0.2
651,307 + ABZR87_RS19120 0.78 -0.3
651,308 - ABZR87_RS19120 0.78 -1.3
651,308 - ABZR87_RS19120 0.78 +0.9
651,408 - ABZR87_RS19120 0.88 -0.4
651,433 + +0.5
651,443 + +0.6
651,446 - +0.3
651,446 - +1.3
651,446 - +0.5
651,446 - -0.3
651,727 + +0.7
651,844 + +0.7
651,845 - +0.7
651,845 - +0.0
651,905 - -1.2
651,905 - +0.6
651,919 + -0.2
651,920 - +0.0
651,920 - -0.7
651,920 - +0.9
651,920 - -0.5
651,955 + +1.8
652,081 + +0.3
652,103 - ABZR87_RS19125 0.11 -0.5
652,103 - ABZR87_RS19125 0.11 +0.0
652,251 - ABZR87_RS19125 0.17 +1.1
652,331 + ABZR87_RS19125 0.20 +0.6
652,331 + ABZR87_RS19125 0.20 +1.6
652,332 - ABZR87_RS19125 0.20 +1.0
652,335 + ABZR87_RS19125 0.20 -1.0
652,361 + ABZR87_RS19125 0.21 +0.1
652,362 - ABZR87_RS19125 0.21 -0.4
652,362 - ABZR87_RS19125 0.21 +0.7
652,420 - ABZR87_RS19125 0.24 -0.2
652,655 + ABZR87_RS19125 0.33 +0.7
652,656 - ABZR87_RS19125 0.33 +0.4
652,727 - ABZR87_RS19125 0.36 +0.5
652,727 - ABZR87_RS19125 0.36 -0.8
652,733 - ABZR87_RS19125 0.37 +0.2
652,772 - ABZR87_RS19125 0.38 +0.5
652,789 + ABZR87_RS19125 0.39 -0.3
652,789 + ABZR87_RS19125 0.39 +0.4
652,789 + ABZR87_RS19125 0.39 +0.4
652,789 + ABZR87_RS19125 0.39 -0.2
652,789 + ABZR87_RS19125 0.39 +0.0
652,790 - ABZR87_RS19125 0.39 +0.6
652,790 - ABZR87_RS19125 0.39 -1.7
652,790 - ABZR87_RS19125 0.39 -1.7
652,933 + ABZR87_RS19125 0.45 +0.7
652,933 + ABZR87_RS19125 0.45 +0.6
652,933 + ABZR87_RS19125 0.45 -0.0
652,934 - ABZR87_RS19125 0.45 +0.2
652,934 - ABZR87_RS19125 0.45 -0.2
652,934 - ABZR87_RS19125 0.45 -1.2
652,934 - ABZR87_RS19125 0.45 +0.9
653,069 - ABZR87_RS19125 0.50 +0.2
653,095 + ABZR87_RS19125 0.52 +0.0
653,096 - ABZR87_RS19125 0.52 -0.4
653,096 - ABZR87_RS19125 0.52 +0.7
653,210 - ABZR87_RS19125 0.56 -0.8
653,245 + ABZR87_RS19125 0.58 -0.3
653,245 + ABZR87_RS19125 0.58 +0.3
653,245 + ABZR87_RS19125 0.58 -0.1
653,245 + ABZR87_RS19125 0.58 -0.3
653,246 - ABZR87_RS19125 0.58 -1.3
653,246 - ABZR87_RS19125 0.58 +0.6
653,246 - ABZR87_RS19125 0.58 +0.4
653,246 - ABZR87_RS19125 0.58 -0.6
653,301 - ABZR87_RS19125 0.60 +0.4
653,301 - ABZR87_RS19125 0.60 -0.2
653,402 - ABZR87_RS19125 0.64 -2.1
653,797 + ABZR87_RS19125 0.80 +0.2
653,797 + ABZR87_RS19125 0.80 -0.1
653,798 - ABZR87_RS19125 0.80 +0.7
653,857 + ABZR87_RS19125 0.83 +0.3
653,857 + ABZR87_RS19125 0.83 -0.0
653,857 + ABZR87_RS19125 0.83 +0.0
653,858 - ABZR87_RS19125 0.83 +0.9
653,858 - ABZR87_RS19125 0.83 +0.3
653,858 - ABZR87_RS19125 0.83 +0.9
653,911 + ABZR87_RS19125 0.85 -0.7
653,912 - ABZR87_RS19125 0.85 +0.1
653,945 - ABZR87_RS19125 0.87 +1.1
653,980 + ABZR87_RS19125 0.88 -0.3
653,981 - ABZR87_RS19125 0.88 -1.5
654,106 + +0.7
654,106 + -0.6
654,106 + +0.2
654,106 + +0.5
654,107 - +0.2
654,107 - +0.2
654,107 - +1.3
654,107 - -0.3
654,107 - -0.4
654,156 + -0.5
654,165 + -1.3
654,347 - -0.7
654,347 - -0.7
654,427 + -0.2
654,428 - -1.6
654,428 - +0.3
654,466 + -0.3
654,466 + +0.2
654,851 + ABZR87_RS19130 0.16 +0.2
654,873 + ABZR87_RS19130 0.17 -0.3
654,874 - ABZR87_RS19130 0.18 +0.6
655,186 + ABZR87_RS19130 0.34 +0.9
655,187 - ABZR87_RS19130 0.34 +0.1

Or see this region's nucleotide sequence