Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15350

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15345 and ABZR87_RS15350 overlap by 8 nucleotidesABZR87_RS15350 and ABZR87_RS15355 are separated by 1 nucleotides ABZR87_RS15345: ABZR87_RS15345 - ABC transporter ATP-binding protein, at 3,229,912 to 3,231,426 _RS15345 ABZR87_RS15350: ABZR87_RS15350 - ABC transporter permease, at 3,231,419 to 3,232,528 _RS15350 ABZR87_RS15355: ABZR87_RS15355 - ABC transporter permease, at 3,232,530 to 3,233,450 _RS15355 Position (kb) 3231 3232 3233Strain fitness (log2 ratio) -2 -1 0 1 2at 3230.455 kb on + strand, within ABZR87_RS15345at 3230.455 kb on + strand, within ABZR87_RS15345at 3230.456 kb on - strand, within ABZR87_RS15345at 3230.456 kb on - strand, within ABZR87_RS15345at 3230.456 kb on - strand, within ABZR87_RS15345at 3230.744 kb on + strand, within ABZR87_RS15345at 3230.940 kb on + strand, within ABZR87_RS15345at 3231.237 kb on + strand, within ABZR87_RS15345at 3231.501 kb on - strandat 3231.692 kb on + strand, within ABZR87_RS15350at 3231.692 kb on + strand, within ABZR87_RS15350at 3231.693 kb on - strand, within ABZR87_RS15350at 3231.770 kb on + strand, within ABZR87_RS15350at 3231.771 kb on - strand, within ABZR87_RS15350at 3231.922 kb on + strand, within ABZR87_RS15350at 3231.922 kb on + strand, within ABZR87_RS15350at 3231.922 kb on + strand, within ABZR87_RS15350at 3231.922 kb on + strand, within ABZR87_RS15350at 3231.922 kb on + strand, within ABZR87_RS15350at 3231.922 kb on + strand, within ABZR87_RS15350at 3231.922 kb on + strand, within ABZR87_RS15350at 3231.922 kb on + strand, within ABZR87_RS15350at 3231.922 kb on + strand, within ABZR87_RS15350at 3231.923 kb on - strand, within ABZR87_RS15350at 3231.923 kb on - strand, within ABZR87_RS15350at 3231.923 kb on - strand, within ABZR87_RS15350at 3231.923 kb on - strand, within ABZR87_RS15350at 3231.923 kb on - strand, within ABZR87_RS15350at 3231.923 kb on - strand, within ABZR87_RS15350at 3231.923 kb on - strand, within ABZR87_RS15350at 3231.923 kb on - strand, within ABZR87_RS15350at 3231.923 kb on - strand, within ABZR87_RS15350at 3231.926 kb on + strand, within ABZR87_RS15350at 3231.926 kb on + strand, within ABZR87_RS15350at 3231.926 kb on + strand, within ABZR87_RS15350at 3231.926 kb on + strand, within ABZR87_RS15350at 3231.926 kb on + strand, within ABZR87_RS15350at 3231.927 kb on - strand, within ABZR87_RS15350at 3231.927 kb on - strand, within ABZR87_RS15350at 3231.927 kb on - strand, within ABZR87_RS15350at 3231.927 kb on - strand, within ABZR87_RS15350at 3231.927 kb on - strand, within ABZR87_RS15350at 3231.950 kb on + strand, within ABZR87_RS15350at 3231.950 kb on + strand, within ABZR87_RS15350at 3231.950 kb on + strand, within ABZR87_RS15350at 3231.950 kb on + strand, within ABZR87_RS15350at 3231.951 kb on - strand, within ABZR87_RS15350at 3232.172 kb on + strand, within ABZR87_RS15350at 3232.173 kb on - strand, within ABZR87_RS15350at 3232.301 kb on + strand, within ABZR87_RS15350at 3232.388 kb on + strand, within ABZR87_RS15350at 3232.388 kb on + strand, within ABZR87_RS15350at 3232.388 kb on + strand, within ABZR87_RS15350at 3232.388 kb on + strand, within ABZR87_RS15350at 3232.389 kb on - strand, within ABZR87_RS15350at 3232.389 kb on - strand, within ABZR87_RS15350at 3232.389 kb on - strand, within ABZR87_RS15350at 3232.389 kb on - strand, within ABZR87_RS15350at 3232.499 kb on + strandat 3232.499 kb on + strandat 3232.529 kb on + strandat 3232.529 kb on + strandat 3232.529 kb on + strandat 3232.530 kb on - strandat 3232.530 kb on - strandat 3232.689 kb on + strand, within ABZR87_RS15355at 3232.778 kb on - strand, within ABZR87_RS15355at 3232.956 kb on + strand, within ABZR87_RS15355at 3232.956 kb on + strand, within ABZR87_RS15355at 3232.956 kb on + strand, within ABZR87_RS15355at 3232.957 kb on - strand, within ABZR87_RS15355at 3232.957 kb on - strand, within ABZR87_RS15355at 3233.136 kb on + strand, within ABZR87_RS15355at 3233.151 kb on + strand, within ABZR87_RS15355at 3233.151 kb on + strand, within ABZR87_RS15355at 3233.151 kb on + strand, within ABZR87_RS15355at 3233.151 kb on + strand, within ABZR87_RS15355at 3233.449 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,230,455 + ABZR87_RS15345 0.36 +0.4
3,230,455 + ABZR87_RS15345 0.36 -1.9
3,230,456 - ABZR87_RS15345 0.36 +0.2
3,230,456 - ABZR87_RS15345 0.36 -1.0
3,230,456 - ABZR87_RS15345 0.36 -0.7
3,230,744 + ABZR87_RS15345 0.55 +1.3
3,230,940 + ABZR87_RS15345 0.68 -0.6
3,231,237 + ABZR87_RS15345 0.87 +0.4
3,231,501 - -0.6
3,231,692 + ABZR87_RS15350 0.25 +0.3
3,231,692 + ABZR87_RS15350 0.25 +0.2
3,231,693 - ABZR87_RS15350 0.25 +1.6
3,231,770 + ABZR87_RS15350 0.32 +0.6
3,231,771 - ABZR87_RS15350 0.32 -1.6
3,231,922 + ABZR87_RS15350 0.45 -0.1
3,231,922 + ABZR87_RS15350 0.45 +0.6
3,231,922 + ABZR87_RS15350 0.45 +1.1
3,231,922 + ABZR87_RS15350 0.45 -0.1
3,231,922 + ABZR87_RS15350 0.45 -0.1
3,231,922 + ABZR87_RS15350 0.45 -0.2
3,231,922 + ABZR87_RS15350 0.45 +0.3
3,231,922 + ABZR87_RS15350 0.45 -0.2
3,231,922 + ABZR87_RS15350 0.45 +0.0
3,231,923 - ABZR87_RS15350 0.45 +0.4
3,231,923 - ABZR87_RS15350 0.45 +0.7
3,231,923 - ABZR87_RS15350 0.45 +0.8
3,231,923 - ABZR87_RS15350 0.45 +0.8
3,231,923 - ABZR87_RS15350 0.45 +0.0
3,231,923 - ABZR87_RS15350 0.45 +0.5
3,231,923 - ABZR87_RS15350 0.45 +1.8
3,231,923 - ABZR87_RS15350 0.45 +0.5
3,231,923 - ABZR87_RS15350 0.45 -0.9
3,231,926 + ABZR87_RS15350 0.46 -0.1
3,231,926 + ABZR87_RS15350 0.46 +0.7
3,231,926 + ABZR87_RS15350 0.46 +1.1
3,231,926 + ABZR87_RS15350 0.46 -1.2
3,231,926 + ABZR87_RS15350 0.46 +0.1
3,231,927 - ABZR87_RS15350 0.46 -0.5
3,231,927 - ABZR87_RS15350 0.46 -0.2
3,231,927 - ABZR87_RS15350 0.46 -0.2
3,231,927 - ABZR87_RS15350 0.46 -0.0
3,231,927 - ABZR87_RS15350 0.46 +0.0
3,231,950 + ABZR87_RS15350 0.48 -0.8
3,231,950 + ABZR87_RS15350 0.48 +0.6
3,231,950 + ABZR87_RS15350 0.48 +0.5
3,231,950 + ABZR87_RS15350 0.48 -2.2
3,231,951 - ABZR87_RS15350 0.48 +2.0
3,232,172 + ABZR87_RS15350 0.68 -0.5
3,232,173 - ABZR87_RS15350 0.68 +0.7
3,232,301 + ABZR87_RS15350 0.79 +1.3
3,232,388 + ABZR87_RS15350 0.87 +0.8
3,232,388 + ABZR87_RS15350 0.87 -0.2
3,232,388 + ABZR87_RS15350 0.87 +0.1
3,232,388 + ABZR87_RS15350 0.87 -0.3
3,232,389 - ABZR87_RS15350 0.87 -1.4
3,232,389 - ABZR87_RS15350 0.87 -0.1
3,232,389 - ABZR87_RS15350 0.87 -0.1
3,232,389 - ABZR87_RS15350 0.87 -0.1
3,232,499 + +0.7
3,232,499 + +0.5
3,232,529 + -0.1
3,232,529 + -0.3
3,232,529 + +0.8
3,232,530 - -0.4
3,232,530 - +1.3
3,232,689 + ABZR87_RS15355 0.17 -0.0
3,232,778 - ABZR87_RS15355 0.27 +0.7
3,232,956 + ABZR87_RS15355 0.46 -0.7
3,232,956 + ABZR87_RS15355 0.46 +0.1
3,232,956 + ABZR87_RS15355 0.46 -1.9
3,232,957 - ABZR87_RS15355 0.46 -0.3
3,232,957 - ABZR87_RS15355 0.46 +0.1
3,233,136 + ABZR87_RS15355 0.66 -0.4
3,233,151 + ABZR87_RS15355 0.67 -1.3
3,233,151 + ABZR87_RS15355 0.67 +0.7
3,233,151 + ABZR87_RS15355 0.67 -0.2
3,233,151 + ABZR87_RS15355 0.67 +0.9
3,233,449 - +0.1

Or see this region's nucleotide sequence