Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14165

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS14160 and ABZR87_RS14165 are separated by 138 nucleotidesABZR87_RS14165 and ABZR87_RS14170 overlap by 2 nucleotidesABZR87_RS14170 and ABZR87_RS14175 are separated by 39 nucleotides ABZR87_RS14160: ABZR87_RS14160 - transglycosylase SLT domain-containing protein, at 2,991,690 to 2,993,240 _RS14160 ABZR87_RS14165: ABZR87_RS14165 - hydroxyacylglutathione hydrolase, at 2,993,379 to 2,994,218 _RS14165 ABZR87_RS14170: ABZR87_RS14170 - class I SAM-dependent methyltransferase, at 2,994,217 to 2,995,122 _RS14170 ABZR87_RS14175: ABZR87_RS14175 - ribonuclease HI, at 2,995,162 to 2,995,608 _RS14175 Position (kb) 2993 2994 2995Strain fitness (log2 ratio) -1 0 1at 2992.428 kb on - strand, within ABZR87_RS14160at 2992.442 kb on + strand, within ABZR87_RS14160at 2992.443 kb on - strand, within ABZR87_RS14160at 2992.456 kb on + strand, within ABZR87_RS14160at 2992.456 kb on + strand, within ABZR87_RS14160at 2992.457 kb on - strand, within ABZR87_RS14160at 2992.457 kb on - strand, within ABZR87_RS14160at 2992.492 kb on + strand, within ABZR87_RS14160at 2992.493 kb on - strand, within ABZR87_RS14160at 2992.493 kb on - strand, within ABZR87_RS14160at 2992.543 kb on + strand, within ABZR87_RS14160at 2992.543 kb on + strand, within ABZR87_RS14160at 2992.543 kb on + strand, within ABZR87_RS14160at 2992.543 kb on + strand, within ABZR87_RS14160at 2992.543 kb on + strand, within ABZR87_RS14160at 2992.543 kb on + strand, within ABZR87_RS14160at 2992.543 kb on + strand, within ABZR87_RS14160at 2992.543 kb on + strand, within ABZR87_RS14160at 2992.543 kb on + strand, within ABZR87_RS14160at 2992.544 kb on - strand, within ABZR87_RS14160at 2992.544 kb on - strand, within ABZR87_RS14160at 2992.544 kb on - strand, within ABZR87_RS14160at 2992.544 kb on - strand, within ABZR87_RS14160at 2992.544 kb on - strand, within ABZR87_RS14160at 2992.544 kb on - strand, within ABZR87_RS14160at 2992.579 kb on + strand, within ABZR87_RS14160at 2992.579 kb on + strand, within ABZR87_RS14160at 2992.649 kb on - strand, within ABZR87_RS14160at 2992.702 kb on + strand, within ABZR87_RS14160at 2992.702 kb on + strand, within ABZR87_RS14160at 2992.702 kb on + strand, within ABZR87_RS14160at 2992.702 kb on + strand, within ABZR87_RS14160at 2992.703 kb on - strand, within ABZR87_RS14160at 2992.703 kb on - strand, within ABZR87_RS14160at 2992.774 kb on + strand, within ABZR87_RS14160at 2992.774 kb on + strand, within ABZR87_RS14160at 2992.774 kb on + strand, within ABZR87_RS14160at 2992.774 kb on + strand, within ABZR87_RS14160at 2992.774 kb on + strand, within ABZR87_RS14160at 2992.774 kb on + strand, within ABZR87_RS14160at 2992.774 kb on + strand, within ABZR87_RS14160at 2992.774 kb on + strand, within ABZR87_RS14160at 2992.775 kb on - strand, within ABZR87_RS14160at 2992.775 kb on - strand, within ABZR87_RS14160at 2992.775 kb on - strand, within ABZR87_RS14160at 2992.775 kb on - strand, within ABZR87_RS14160at 2992.775 kb on - strand, within ABZR87_RS14160at 2992.775 kb on - strand, within ABZR87_RS14160at 2992.775 kb on - strand, within ABZR87_RS14160at 2992.921 kb on + strand, within ABZR87_RS14160at 2992.921 kb on + strand, within ABZR87_RS14160at 2992.922 kb on - strand, within ABZR87_RS14160at 2992.922 kb on - strand, within ABZR87_RS14160at 2992.978 kb on + strand, within ABZR87_RS14160at 2992.978 kb on + strand, within ABZR87_RS14160at 2992.988 kb on + strand, within ABZR87_RS14160at 2993.278 kb on + strandat 2993.278 kb on + strandat 2993.278 kb on + strandat 2993.279 kb on - strandat 2993.279 kb on - strandat 2993.279 kb on - strandat 2993.282 kb on - strandat 2993.282 kb on - strandat 2993.282 kb on - strandat 2993.418 kb on + strandat 2993.418 kb on + strandat 2993.419 kb on - strandat 2993.568 kb on + strand, within ABZR87_RS14165at 2993.569 kb on - strand, within ABZR87_RS14165at 2993.644 kb on + strand, within ABZR87_RS14165at 2993.644 kb on + strand, within ABZR87_RS14165at 2993.644 kb on + strand, within ABZR87_RS14165at 2993.644 kb on + strand, within ABZR87_RS14165at 2993.644 kb on + strand, within ABZR87_RS14165at 2993.645 kb on - strand, within ABZR87_RS14165at 2993.645 kb on - strand, within ABZR87_RS14165at 2993.645 kb on - strand, within ABZR87_RS14165at 2993.645 kb on - strand, within ABZR87_RS14165at 2993.645 kb on - strand, within ABZR87_RS14165at 2993.645 kb on - strand, within ABZR87_RS14165at 2993.645 kb on - strand, within ABZR87_RS14165at 2993.645 kb on - strand, within ABZR87_RS14165at 2993.645 kb on - strand, within ABZR87_RS14165at 2993.659 kb on + strand, within ABZR87_RS14165at 2993.660 kb on - strand, within ABZR87_RS14165at 2993.670 kb on - strand, within ABZR87_RS14165at 2993.762 kb on + strand, within ABZR87_RS14165at 2993.763 kb on - strand, within ABZR87_RS14165at 2993.763 kb on - strand, within ABZR87_RS14165at 2993.763 kb on - strand, within ABZR87_RS14165at 2993.763 kb on - strand, within ABZR87_RS14165at 2993.815 kb on + strand, within ABZR87_RS14165at 2993.816 kb on - strand, within ABZR87_RS14165at 2993.816 kb on - strand, within ABZR87_RS14165at 2993.816 kb on - strand, within ABZR87_RS14165at 2993.816 kb on - strand, within ABZR87_RS14165at 2993.816 kb on - strand, within ABZR87_RS14165at 2993.816 kb on - strand, within ABZR87_RS14165at 2993.834 kb on + strand, within ABZR87_RS14165at 2993.834 kb on + strand, within ABZR87_RS14165at 2993.835 kb on - strand, within ABZR87_RS14165at 2994.039 kb on + strand, within ABZR87_RS14165at 2994.039 kb on + strand, within ABZR87_RS14165at 2994.039 kb on + strand, within ABZR87_RS14165at 2994.040 kb on - strand, within ABZR87_RS14165at 2994.136 kb on - strandat 2994.146 kb on + strandat 2994.146 kb on + strandat 2994.146 kb on + strandat 2994.146 kb on + strandat 2994.146 kb on + strandat 2994.147 kb on - strandat 2994.147 kb on - strandat 2994.147 kb on - strandat 2994.148 kb on + strandat 2994.148 kb on + strandat 2994.148 kb on + strandat 2994.149 kb on - strandat 2994.149 kb on - strandat 2994.149 kb on - strandat 2994.190 kb on - strandat 2994.190 kb on - strandat 2994.190 kb on - strandat 2994.248 kb on + strandat 2994.248 kb on + strandat 2994.248 kb on + strandat 2994.248 kb on + strandat 2994.249 kb on - strandat 2994.249 kb on - strandat 2994.249 kb on - strandat 2994.249 kb on - strandat 2995.041 kb on + strandat 2995.041 kb on + strandat 2995.042 kb on - strandat 2995.042 kb on - strandat 2995.180 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,992,428 - ABZR87_RS14160 0.48 +0.3
2,992,442 + ABZR87_RS14160 0.48 +0.7
2,992,443 - ABZR87_RS14160 0.49 +1.4
2,992,456 + ABZR87_RS14160 0.49 +0.3
2,992,456 + ABZR87_RS14160 0.49 -0.2
2,992,457 - ABZR87_RS14160 0.49 -0.0
2,992,457 - ABZR87_RS14160 0.49 -1.1
2,992,492 + ABZR87_RS14160 0.52 +0.4
2,992,493 - ABZR87_RS14160 0.52 +0.6
2,992,493 - ABZR87_RS14160 0.52 +0.4
2,992,543 + ABZR87_RS14160 0.55 +0.2
2,992,543 + ABZR87_RS14160 0.55 +0.2
2,992,543 + ABZR87_RS14160 0.55 +0.6
2,992,543 + ABZR87_RS14160 0.55 +0.1
2,992,543 + ABZR87_RS14160 0.55 +0.9
2,992,543 + ABZR87_RS14160 0.55 +1.2
2,992,543 + ABZR87_RS14160 0.55 +0.3
2,992,543 + ABZR87_RS14160 0.55 +1.4
2,992,543 + ABZR87_RS14160 0.55 +0.5
2,992,544 - ABZR87_RS14160 0.55 +1.1
2,992,544 - ABZR87_RS14160 0.55 +1.0
2,992,544 - ABZR87_RS14160 0.55 +0.5
2,992,544 - ABZR87_RS14160 0.55 +0.3
2,992,544 - ABZR87_RS14160 0.55 +0.4
2,992,544 - ABZR87_RS14160 0.55 +0.3
2,992,579 + ABZR87_RS14160 0.57 +0.2
2,992,579 + ABZR87_RS14160 0.57 +0.3
2,992,649 - ABZR87_RS14160 0.62 +0.1
2,992,702 + ABZR87_RS14160 0.65 +0.5
2,992,702 + ABZR87_RS14160 0.65 +0.7
2,992,702 + ABZR87_RS14160 0.65 +0.8
2,992,702 + ABZR87_RS14160 0.65 +1.4
2,992,703 - ABZR87_RS14160 0.65 +0.4
2,992,703 - ABZR87_RS14160 0.65 +0.9
2,992,774 + ABZR87_RS14160 0.70 +0.6
2,992,774 + ABZR87_RS14160 0.70 +1.7
2,992,774 + ABZR87_RS14160 0.70 +0.9
2,992,774 + ABZR87_RS14160 0.70 +0.5
2,992,774 + ABZR87_RS14160 0.70 +0.5
2,992,774 + ABZR87_RS14160 0.70 +0.6
2,992,774 + ABZR87_RS14160 0.70 +0.3
2,992,774 + ABZR87_RS14160 0.70 +0.9
2,992,775 - ABZR87_RS14160 0.70 +0.1
2,992,775 - ABZR87_RS14160 0.70 +1.2
2,992,775 - ABZR87_RS14160 0.70 +0.1
2,992,775 - ABZR87_RS14160 0.70 +0.4
2,992,775 - ABZR87_RS14160 0.70 +0.0
2,992,775 - ABZR87_RS14160 0.70 +0.7
2,992,775 - ABZR87_RS14160 0.70 -0.1
2,992,921 + ABZR87_RS14160 0.79 +0.6
2,992,921 + ABZR87_RS14160 0.79 +1.2
2,992,922 - ABZR87_RS14160 0.79 +0.5
2,992,922 - ABZR87_RS14160 0.79 -0.2
2,992,978 + ABZR87_RS14160 0.83 +0.7
2,992,978 + ABZR87_RS14160 0.83 +0.9
2,992,988 + ABZR87_RS14160 0.84 +0.2
2,993,278 + +0.2
2,993,278 + +0.3
2,993,278 + +0.4
2,993,279 - -0.1
2,993,279 - +0.5
2,993,279 - -0.1
2,993,282 - -0.6
2,993,282 - -0.6
2,993,282 - +0.9
2,993,418 + -1.2
2,993,418 + +0.7
2,993,419 - +0.1
2,993,568 + ABZR87_RS14165 0.23 -0.0
2,993,569 - ABZR87_RS14165 0.23 -0.2
2,993,644 + ABZR87_RS14165 0.32 -1.1
2,993,644 + ABZR87_RS14165 0.32 -0.4
2,993,644 + ABZR87_RS14165 0.32 +0.4
2,993,644 + ABZR87_RS14165 0.32 +0.8
2,993,644 + ABZR87_RS14165 0.32 -0.7
2,993,645 - ABZR87_RS14165 0.32 +0.4
2,993,645 - ABZR87_RS14165 0.32 +0.5
2,993,645 - ABZR87_RS14165 0.32 +0.6
2,993,645 - ABZR87_RS14165 0.32 +0.7
2,993,645 - ABZR87_RS14165 0.32 +0.0
2,993,645 - ABZR87_RS14165 0.32 +0.1
2,993,645 - ABZR87_RS14165 0.32 +0.3
2,993,645 - ABZR87_RS14165 0.32 +0.1
2,993,645 - ABZR87_RS14165 0.32 +0.4
2,993,659 + ABZR87_RS14165 0.33 -0.7
2,993,660 - ABZR87_RS14165 0.33 +0.3
2,993,670 - ABZR87_RS14165 0.35 -1.4
2,993,762 + ABZR87_RS14165 0.46 +1.0
2,993,763 - ABZR87_RS14165 0.46 +0.3
2,993,763 - ABZR87_RS14165 0.46 +0.2
2,993,763 - ABZR87_RS14165 0.46 +0.2
2,993,763 - ABZR87_RS14165 0.46 -0.3
2,993,815 + ABZR87_RS14165 0.52 -0.3
2,993,816 - ABZR87_RS14165 0.52 -0.7
2,993,816 - ABZR87_RS14165 0.52 +1.0
2,993,816 - ABZR87_RS14165 0.52 +1.4
2,993,816 - ABZR87_RS14165 0.52 -0.9
2,993,816 - ABZR87_RS14165 0.52 +0.4
2,993,816 - ABZR87_RS14165 0.52 -0.7
2,993,834 + ABZR87_RS14165 0.54 -1.3
2,993,834 + ABZR87_RS14165 0.54 +0.5
2,993,835 - ABZR87_RS14165 0.54 -0.2
2,994,039 + ABZR87_RS14165 0.79 +0.3
2,994,039 + ABZR87_RS14165 0.79 +0.5
2,994,039 + ABZR87_RS14165 0.79 -0.2
2,994,040 - ABZR87_RS14165 0.79 +0.5
2,994,136 - +0.5
2,994,146 + +0.4
2,994,146 + -0.3
2,994,146 + +0.4
2,994,146 + +0.3
2,994,146 + -0.1
2,994,147 - +0.1
2,994,147 - +0.4
2,994,147 - +0.6
2,994,148 + +0.5
2,994,148 + +0.6
2,994,148 + +0.6
2,994,149 - -0.4
2,994,149 - +1.0
2,994,149 - +0.1
2,994,190 - -0.3
2,994,190 - +1.0
2,994,190 - +0.5
2,994,248 + -0.2
2,994,248 + +0.7
2,994,248 + +0.4
2,994,248 + -0.0
2,994,249 - +0.4
2,994,249 - -0.9
2,994,249 - +1.6
2,994,249 - +0.0
2,995,041 + +0.3
2,995,041 + +0.9
2,995,042 - -0.1
2,995,042 - -0.1
2,995,180 + -0.3

Or see this region's nucleotide sequence