Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS13290

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS13285 and ABZR87_RS13290 are separated by 404 nucleotidesABZR87_RS13290 and ABZR87_RS13295 are separated by 122 nucleotides ABZR87_RS13285: ABZR87_RS13285 - polyhydroxyalkanoate synthesis repressor PhaR, at 2,816,478 to 2,817,032 _RS13285 ABZR87_RS13290: ABZR87_RS13290 - 3-ketoacyl-ACP reductase, at 2,817,437 to 2,818,177 _RS13290 ABZR87_RS13295: ABZR87_RS13295 - acetyl-CoA C-acetyltransferase, at 2,818,300 to 2,819,481 _RS13295 Position (kb) 2817 2818 2819Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2816.479 kb on + strandat 2816.479 kb on + strandat 2816.479 kb on + strandat 2816.480 kb on - strandat 2816.480 kb on - strandat 2816.480 kb on - strandat 2816.480 kb on - strandat 2816.587 kb on + strand, within ABZR87_RS13285at 2816.587 kb on + strand, within ABZR87_RS13285at 2816.587 kb on + strand, within ABZR87_RS13285at 2816.587 kb on + strand, within ABZR87_RS13285at 2816.587 kb on + strand, within ABZR87_RS13285at 2816.587 kb on + strand, within ABZR87_RS13285at 2816.587 kb on + strand, within ABZR87_RS13285at 2816.587 kb on + strand, within ABZR87_RS13285at 2816.587 kb on + strand, within ABZR87_RS13285at 2816.587 kb on + strand, within ABZR87_RS13285at 2816.588 kb on - strand, within ABZR87_RS13285at 2816.588 kb on - strand, within ABZR87_RS13285at 2816.588 kb on - strand, within ABZR87_RS13285at 2816.588 kb on - strand, within ABZR87_RS13285at 2816.588 kb on - strand, within ABZR87_RS13285at 2816.588 kb on - strand, within ABZR87_RS13285at 2816.588 kb on - strand, within ABZR87_RS13285at 2816.588 kb on - strand, within ABZR87_RS13285at 2816.671 kb on + strand, within ABZR87_RS13285at 2816.671 kb on + strand, within ABZR87_RS13285at 2816.671 kb on + strand, within ABZR87_RS13285at 2816.671 kb on + strand, within ABZR87_RS13285at 2816.672 kb on - strand, within ABZR87_RS13285at 2816.672 kb on - strand, within ABZR87_RS13285at 2816.672 kb on - strand, within ABZR87_RS13285at 2816.726 kb on + strand, within ABZR87_RS13285at 2816.726 kb on + strand, within ABZR87_RS13285at 2816.740 kb on + strand, within ABZR87_RS13285at 2816.741 kb on - strand, within ABZR87_RS13285at 2816.741 kb on - strand, within ABZR87_RS13285at 2816.741 kb on - strand, within ABZR87_RS13285at 2816.741 kb on - strand, within ABZR87_RS13285at 2816.741 kb on - strand, within ABZR87_RS13285at 2816.774 kb on - strand, within ABZR87_RS13285at 2816.774 kb on - strand, within ABZR87_RS13285at 2816.774 kb on - strand, within ABZR87_RS13285at 2816.950 kb on + strand, within ABZR87_RS13285at 2816.950 kb on + strand, within ABZR87_RS13285at 2816.950 kb on + strand, within ABZR87_RS13285at 2816.950 kb on + strand, within ABZR87_RS13285at 2816.950 kb on + strand, within ABZR87_RS13285at 2816.950 kb on + strand, within ABZR87_RS13285at 2816.950 kb on + strand, within ABZR87_RS13285at 2816.950 kb on + strand, within ABZR87_RS13285at 2816.951 kb on - strand, within ABZR87_RS13285at 2816.951 kb on - strand, within ABZR87_RS13285at 2816.951 kb on - strand, within ABZR87_RS13285at 2816.951 kb on - strand, within ABZR87_RS13285at 2816.951 kb on - strand, within ABZR87_RS13285at 2816.951 kb on - strand, within ABZR87_RS13285at 2816.951 kb on - strand, within ABZR87_RS13285at 2816.951 kb on - strand, within ABZR87_RS13285at 2816.966 kb on + strand, within ABZR87_RS13285at 2816.971 kb on + strand, within ABZR87_RS13285at 2816.971 kb on + strand, within ABZR87_RS13285at 2816.971 kb on + strand, within ABZR87_RS13285at 2816.971 kb on + strand, within ABZR87_RS13285at 2816.971 kb on + strand, within ABZR87_RS13285at 2816.972 kb on - strand, within ABZR87_RS13285at 2816.972 kb on - strand, within ABZR87_RS13285at 2816.972 kb on - strand, within ABZR87_RS13285at 2816.972 kb on - strand, within ABZR87_RS13285at 2816.990 kb on - strandat 2817.233 kb on + strandat 2817.234 kb on - strandat 2817.234 kb on - strandat 2817.234 kb on - strandat 2817.388 kb on + strandat 2817.388 kb on + strandat 2817.388 kb on + strandat 2817.389 kb on - strandat 2817.389 kb on - strandat 2817.389 kb on - strandat 2817.389 kb on - strandat 2817.622 kb on + strand, within ABZR87_RS13290at 2817.622 kb on + strand, within ABZR87_RS13290at 2817.624 kb on + strand, within ABZR87_RS13290at 2817.624 kb on + strand, within ABZR87_RS13290at 2818.158 kb on + strandat 2818.158 kb on + strandat 2818.158 kb on + strandat 2818.158 kb on + strandat 2818.158 kb on + strandat 2818.158 kb on + strandat 2818.159 kb on - strandat 2818.159 kb on - strandat 2818.187 kb on + strandat 2818.188 kb on - strandat 2818.188 kb on - strandat 2818.200 kb on + strandat 2818.201 kb on - strandat 2818.201 kb on - strandat 2818.201 kb on - strandat 2818.302 kb on - strandat 2818.479 kb on + strand, within ABZR87_RS13295at 2818.479 kb on + strand, within ABZR87_RS13295at 2818.479 kb on + strand, within ABZR87_RS13295at 2818.479 kb on + strand, within ABZR87_RS13295at 2818.479 kb on + strand, within ABZR87_RS13295at 2818.647 kb on - strand, within ABZR87_RS13295at 2818.979 kb on + strand, within ABZR87_RS13295at 2818.980 kb on - strand, within ABZR87_RS13295at 2819.018 kb on + strand, within ABZR87_RS13295at 2819.019 kb on - strand, within ABZR87_RS13295at 2819.019 kb on - strand, within ABZR87_RS13295at 2819.019 kb on - strand, within ABZR87_RS13295at 2819.027 kb on + strand, within ABZR87_RS13295at 2819.028 kb on - strand, within ABZR87_RS13295at 2819.028 kb on - strand, within ABZR87_RS13295at 2819.028 kb on - strand, within ABZR87_RS13295

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,816,479 + +0.4
2,816,479 + -1.0
2,816,479 + -0.9
2,816,480 - -0.1
2,816,480 - +0.7
2,816,480 - -0.9
2,816,480 - -0.2
2,816,587 + ABZR87_RS13285 0.20 -3.8
2,816,587 + ABZR87_RS13285 0.20 -3.3
2,816,587 + ABZR87_RS13285 0.20 -1.8
2,816,587 + ABZR87_RS13285 0.20 -2.9
2,816,587 + ABZR87_RS13285 0.20 -3.0
2,816,587 + ABZR87_RS13285 0.20 -4.4
2,816,587 + ABZR87_RS13285 0.20 -1.6
2,816,587 + ABZR87_RS13285 0.20 -1.5
2,816,587 + ABZR87_RS13285 0.20 -1.9
2,816,587 + ABZR87_RS13285 0.20 -1.8
2,816,588 - ABZR87_RS13285 0.20 -1.2
2,816,588 - ABZR87_RS13285 0.20 -3.8
2,816,588 - ABZR87_RS13285 0.20 +0.4
2,816,588 - ABZR87_RS13285 0.20 -3.4
2,816,588 - ABZR87_RS13285 0.20 -1.7
2,816,588 - ABZR87_RS13285 0.20 -1.3
2,816,588 - ABZR87_RS13285 0.20 -3.2
2,816,588 - ABZR87_RS13285 0.20 -0.7
2,816,671 + ABZR87_RS13285 0.35 -2.2
2,816,671 + ABZR87_RS13285 0.35 -3.4
2,816,671 + ABZR87_RS13285 0.35 -1.0
2,816,671 + ABZR87_RS13285 0.35 -0.6
2,816,672 - ABZR87_RS13285 0.35 -1.4
2,816,672 - ABZR87_RS13285 0.35 -1.1
2,816,672 - ABZR87_RS13285 0.35 -2.3
2,816,726 + ABZR87_RS13285 0.45 -3.1
2,816,726 + ABZR87_RS13285 0.45 -3.6
2,816,740 + ABZR87_RS13285 0.47 -2.6
2,816,741 - ABZR87_RS13285 0.47 -1.4
2,816,741 - ABZR87_RS13285 0.47 -2.9
2,816,741 - ABZR87_RS13285 0.47 -3.3
2,816,741 - ABZR87_RS13285 0.47 -2.3
2,816,741 - ABZR87_RS13285 0.47 -3.0
2,816,774 - ABZR87_RS13285 0.53 -4.4
2,816,774 - ABZR87_RS13285 0.53 -2.9
2,816,774 - ABZR87_RS13285 0.53 -4.7
2,816,950 + ABZR87_RS13285 0.85 -4.2
2,816,950 + ABZR87_RS13285 0.85 -3.3
2,816,950 + ABZR87_RS13285 0.85 -3.9
2,816,950 + ABZR87_RS13285 0.85 -3.4
2,816,950 + ABZR87_RS13285 0.85 -1.0
2,816,950 + ABZR87_RS13285 0.85 -4.9
2,816,950 + ABZR87_RS13285 0.85 -2.2
2,816,950 + ABZR87_RS13285 0.85 -3.9
2,816,951 - ABZR87_RS13285 0.85 -3.1
2,816,951 - ABZR87_RS13285 0.85 -3.2
2,816,951 - ABZR87_RS13285 0.85 -2.7
2,816,951 - ABZR87_RS13285 0.85 -1.0
2,816,951 - ABZR87_RS13285 0.85 -3.5
2,816,951 - ABZR87_RS13285 0.85 -3.1
2,816,951 - ABZR87_RS13285 0.85 -2.9
2,816,951 - ABZR87_RS13285 0.85 -4.2
2,816,966 + ABZR87_RS13285 0.88 -3.4
2,816,971 + ABZR87_RS13285 0.89 -1.3
2,816,971 + ABZR87_RS13285 0.89 -2.9
2,816,971 + ABZR87_RS13285 0.89 -3.2
2,816,971 + ABZR87_RS13285 0.89 -1.3
2,816,971 + ABZR87_RS13285 0.89 -2.2
2,816,972 - ABZR87_RS13285 0.89 -1.6
2,816,972 - ABZR87_RS13285 0.89 -3.2
2,816,972 - ABZR87_RS13285 0.89 -3.4
2,816,972 - ABZR87_RS13285 0.89 -1.7
2,816,990 - -2.2
2,817,233 + -1.7
2,817,234 - +0.3
2,817,234 - +1.2
2,817,234 - -1.3
2,817,388 + -0.4
2,817,388 + -0.8
2,817,388 + -0.5
2,817,389 - -0.0
2,817,389 - +0.1
2,817,389 - -0.6
2,817,389 - +1.8
2,817,622 + ABZR87_RS13290 0.25 -2.3
2,817,622 + ABZR87_RS13290 0.25 -2.4
2,817,624 + ABZR87_RS13290 0.25 -1.6
2,817,624 + ABZR87_RS13290 0.25 -3.0
2,818,158 + -1.9
2,818,158 + -3.0
2,818,158 + -2.2
2,818,158 + -3.6
2,818,158 + -1.5
2,818,158 + -1.7
2,818,159 - -1.4
2,818,159 - -1.4
2,818,187 + -1.6
2,818,188 - -0.0
2,818,188 - +0.6
2,818,200 + -1.0
2,818,201 - +0.1
2,818,201 - +0.5
2,818,201 - +0.6
2,818,302 - +1.1
2,818,479 + ABZR87_RS13295 0.15 +0.3
2,818,479 + ABZR87_RS13295 0.15 +0.5
2,818,479 + ABZR87_RS13295 0.15 +0.0
2,818,479 + ABZR87_RS13295 0.15 -1.0
2,818,479 + ABZR87_RS13295 0.15 -0.5
2,818,647 - ABZR87_RS13295 0.29 +1.0
2,818,979 + ABZR87_RS13295 0.57 -2.4
2,818,980 - ABZR87_RS13295 0.58 +0.4
2,819,018 + ABZR87_RS13295 0.61 -0.5
2,819,019 - ABZR87_RS13295 0.61 -0.8
2,819,019 - ABZR87_RS13295 0.61 +0.7
2,819,019 - ABZR87_RS13295 0.61 -0.7
2,819,027 + ABZR87_RS13295 0.62 -1.1
2,819,028 - ABZR87_RS13295 0.62 +0.4
2,819,028 - ABZR87_RS13295 0.62 -0.6
2,819,028 - ABZR87_RS13295 0.62 +0.2

Or see this region's nucleotide sequence