Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00220

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00215 and ABZR87_RS00220 are separated by 153 nucleotidesABZR87_RS00220 and ABZR87_RS00225 are separated by 41 nucleotides ABZR87_RS00215: ABZR87_RS00215 - sulfite exporter TauE/SafE family protein, at 42,559 to 43,332 _RS00215 ABZR87_RS00220: ABZR87_RS00220 - CysB family HTH-type transcriptional regulator, at 43,486 to 44,427 _RS00220 ABZR87_RS00225: ABZR87_RS00225 - ABC transporter substrate-binding protein, at 44,469 to 45,638 _RS00225 Position (kb) 43 44 45Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 42.661 kb on - strand, within ABZR87_RS00215at 42.719 kb on + strand, within ABZR87_RS00215at 42.719 kb on + strand, within ABZR87_RS00215at 42.719 kb on + strand, within ABZR87_RS00215at 42.719 kb on + strand, within ABZR87_RS00215at 42.719 kb on + strand, within ABZR87_RS00215at 42.719 kb on + strand, within ABZR87_RS00215at 42.719 kb on + strand, within ABZR87_RS00215at 42.719 kb on + strand, within ABZR87_RS00215at 42.720 kb on - strand, within ABZR87_RS00215at 42.720 kb on - strand, within ABZR87_RS00215at 42.720 kb on - strand, within ABZR87_RS00215at 42.720 kb on - strand, within ABZR87_RS00215at 42.720 kb on - strand, within ABZR87_RS00215at 42.761 kb on + strand, within ABZR87_RS00215at 42.761 kb on + strand, within ABZR87_RS00215at 42.762 kb on - strand, within ABZR87_RS00215at 42.762 kb on - strand, within ABZR87_RS00215at 42.806 kb on + strand, within ABZR87_RS00215at 42.929 kb on + strand, within ABZR87_RS00215at 43.135 kb on - strand, within ABZR87_RS00215at 43.234 kb on + strand, within ABZR87_RS00215at 43.234 kb on + strand, within ABZR87_RS00215at 43.235 kb on - strand, within ABZR87_RS00215at 43.235 kb on - strand, within ABZR87_RS00215at 43.235 kb on - strand, within ABZR87_RS00215at 43.319 kb on + strandat 43.319 kb on + strandat 43.319 kb on + strandat 43.320 kb on - strandat 43.320 kb on - strandat 43.320 kb on - strandat 43.357 kb on + strandat 43.358 kb on - strandat 43.358 kb on - strandat 43.378 kb on + strandat 43.378 kb on + strandat 43.379 kb on - strandat 43.379 kb on - strandat 43.379 kb on - strandat 43.379 kb on - strandat 43.379 kb on - strandat 43.394 kb on + strandat 43.394 kb on + strandat 43.395 kb on - strandat 43.424 kb on - strandat 43.424 kb on - strandat 43.424 kb on - strandat 43.424 kb on - strandat 43.424 kb on - strandat 43.424 kb on - strandat 43.425 kb on + strandat 43.426 kb on - strandat 43.440 kb on - strandat 43.443 kb on + strandat 43.444 kb on - strandat 43.470 kb on + strandat 43.470 kb on + strandat 43.471 kb on - strandat 43.471 kb on - strandat 43.566 kb on + strandat 43.587 kb on + strand, within ABZR87_RS00220at 43.587 kb on + strand, within ABZR87_RS00220at 43.588 kb on - strand, within ABZR87_RS00220at 43.588 kb on - strand, within ABZR87_RS00220at 43.588 kb on - strand, within ABZR87_RS00220at 43.588 kb on - strand, within ABZR87_RS00220at 43.588 kb on - strand, within ABZR87_RS00220at 43.588 kb on - strand, within ABZR87_RS00220at 43.588 kb on - strand, within ABZR87_RS00220at 43.744 kb on + strand, within ABZR87_RS00220at 43.744 kb on + strand, within ABZR87_RS00220at 43.744 kb on + strand, within ABZR87_RS00220at 43.744 kb on + strand, within ABZR87_RS00220at 43.840 kb on + strand, within ABZR87_RS00220at 43.840 kb on + strand, within ABZR87_RS00220at 43.841 kb on - strand, within ABZR87_RS00220at 43.841 kb on - strand, within ABZR87_RS00220at 43.841 kb on - strand, within ABZR87_RS00220at 44.074 kb on + strand, within ABZR87_RS00220at 44.074 kb on + strand, within ABZR87_RS00220at 44.074 kb on + strand, within ABZR87_RS00220at 44.074 kb on + strand, within ABZR87_RS00220at 44.074 kb on + strand, within ABZR87_RS00220at 44.074 kb on + strand, within ABZR87_RS00220at 44.074 kb on + strand, within ABZR87_RS00220at 44.074 kb on + strand, within ABZR87_RS00220at 44.074 kb on + strand, within ABZR87_RS00220at 44.074 kb on + strand, within ABZR87_RS00220at 44.075 kb on - strand, within ABZR87_RS00220at 44.075 kb on - strand, within ABZR87_RS00220at 44.182 kb on + strand, within ABZR87_RS00220at 44.182 kb on + strand, within ABZR87_RS00220at 44.182 kb on + strand, within ABZR87_RS00220at 44.183 kb on - strand, within ABZR87_RS00220at 44.183 kb on - strand, within ABZR87_RS00220at 44.183 kb on - strand, within ABZR87_RS00220at 44.320 kb on + strand, within ABZR87_RS00220at 44.320 kb on + strand, within ABZR87_RS00220at 44.320 kb on + strand, within ABZR87_RS00220at 44.339 kb on - strandat 44.339 kb on - strandat 44.339 kb on - strandat 44.339 kb on - strandat 44.417 kb on - strandat 44.819 kb on + strand, within ABZR87_RS00225at 44.819 kb on + strand, within ABZR87_RS00225at 44.969 kb on + strand, within ABZR87_RS00225at 44.969 kb on + strand, within ABZR87_RS00225at 44.969 kb on + strand, within ABZR87_RS00225at 44.979 kb on + strand, within ABZR87_RS00225at 44.980 kb on - strand, within ABZR87_RS00225at 45.183 kb on + strand, within ABZR87_RS00225at 45.184 kb on - strand, within ABZR87_RS00225at 45.199 kb on - strand, within ABZR87_RS00225at 45.199 kb on - strand, within ABZR87_RS00225at 45.260 kb on + strand, within ABZR87_RS00225at 45.260 kb on + strand, within ABZR87_RS00225at 45.260 kb on + strand, within ABZR87_RS00225at 45.260 kb on + strand, within ABZR87_RS00225at 45.260 kb on + strand, within ABZR87_RS00225at 45.261 kb on - strand, within ABZR87_RS00225at 45.261 kb on - strand, within ABZR87_RS00225at 45.261 kb on - strand, within ABZR87_RS00225at 45.261 kb on - strand, within ABZR87_RS00225at 45.261 kb on - strand, within ABZR87_RS00225at 45.359 kb on + strand, within ABZR87_RS00225at 45.359 kb on + strand, within ABZR87_RS00225at 45.359 kb on + strand, within ABZR87_RS00225at 45.359 kb on + strand, within ABZR87_RS00225at 45.359 kb on + strand, within ABZR87_RS00225at 45.359 kb on + strand, within ABZR87_RS00225at 45.359 kb on + strand, within ABZR87_RS00225at 45.359 kb on + strand, within ABZR87_RS00225at 45.360 kb on - strand, within ABZR87_RS00225at 45.360 kb on - strand, within ABZR87_RS00225at 45.360 kb on - strand, within ABZR87_RS00225at 45.360 kb on - strand, within ABZR87_RS00225at 45.360 kb on - strand, within ABZR87_RS00225at 45.360 kb on - strand, within ABZR87_RS00225at 45.360 kb on - strand, within ABZR87_RS00225at 45.360 kb on - strand, within ABZR87_RS00225at 45.360 kb on - strand, within ABZR87_RS00225at 45.360 kb on - strand, within ABZR87_RS00225at 45.364 kb on - strand, within ABZR87_RS00225at 45.364 kb on - strand, within ABZR87_RS00225

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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42,661 - ABZR87_RS00215 0.13 +0.3
42,719 + ABZR87_RS00215 0.21 -2.1
42,719 + ABZR87_RS00215 0.21 -5.7
42,719 + ABZR87_RS00215 0.21 -2.9
42,719 + ABZR87_RS00215 0.21 -4.5
42,719 + ABZR87_RS00215 0.21 -1.9
42,719 + ABZR87_RS00215 0.21 -4.1
42,719 + ABZR87_RS00215 0.21 -4.0
42,719 + ABZR87_RS00215 0.21 -2.5
42,720 - ABZR87_RS00215 0.21 -0.6
42,720 - ABZR87_RS00215 0.21 -0.4
42,720 - ABZR87_RS00215 0.21 +0.7
42,720 - ABZR87_RS00215 0.21 +0.1
42,720 - ABZR87_RS00215 0.21 +1.0
42,761 + ABZR87_RS00215 0.26 -2.3
42,761 + ABZR87_RS00215 0.26 -3.9
42,762 - ABZR87_RS00215 0.26 -0.7
42,762 - ABZR87_RS00215 0.26 +0.7
42,806 + ABZR87_RS00215 0.32 -3.5
42,929 + ABZR87_RS00215 0.48 -0.9
43,135 - ABZR87_RS00215 0.74 -2.9
43,234 + ABZR87_RS00215 0.87 -2.9
43,234 + ABZR87_RS00215 0.87 -3.5
43,235 - ABZR87_RS00215 0.87 -1.7
43,235 - ABZR87_RS00215 0.87 -3.9
43,235 - ABZR87_RS00215 0.87 -1.1
43,319 + -1.7
43,319 + -2.8
43,319 + -2.6
43,320 - -3.5
43,320 - -0.9
43,320 - -3.3
43,357 + -1.4
43,358 - -0.3
43,358 - -1.3
43,378 + -1.4
43,378 + -2.4
43,379 - -0.2
43,379 - +0.6
43,379 - +0.6
43,379 - -0.6
43,379 - -2.7
43,394 + -0.9
43,394 + -2.5
43,395 - -2.2
43,424 - -2.5
43,424 - -1.4
43,424 - -1.8
43,424 - -1.1
43,424 - -1.3
43,424 - +0.7
43,425 + -2.3
43,426 - +0.3
43,440 - +0.4
43,443 + -0.9
43,444 - +0.1
43,470 + -0.3
43,470 + +0.2
43,471 - +0.3
43,471 - +0.2
43,566 + -3.6
43,587 + ABZR87_RS00220 0.11 -1.8
43,587 + ABZR87_RS00220 0.11 -2.8
43,588 - ABZR87_RS00220 0.11 -2.6
43,588 - ABZR87_RS00220 0.11 -3.3
43,588 - ABZR87_RS00220 0.11 -2.1
43,588 - ABZR87_RS00220 0.11 -3.1
43,588 - ABZR87_RS00220 0.11 -3.1
43,588 - ABZR87_RS00220 0.11 -1.9
43,588 - ABZR87_RS00220 0.11 -3.3
43,744 + ABZR87_RS00220 0.27 -2.0
43,744 + ABZR87_RS00220 0.27 -2.7
43,744 + ABZR87_RS00220 0.27 -1.6
43,744 + ABZR87_RS00220 0.27 -1.3
43,840 + ABZR87_RS00220 0.38 -1.3
43,840 + ABZR87_RS00220 0.38 -2.7
43,841 - ABZR87_RS00220 0.38 -3.8
43,841 - ABZR87_RS00220 0.38 -3.2
43,841 - ABZR87_RS00220 0.38 -2.3
44,074 + ABZR87_RS00220 0.62 -2.1
44,074 + ABZR87_RS00220 0.62 -3.7
44,074 + ABZR87_RS00220 0.62 -2.2
44,074 + ABZR87_RS00220 0.62 -1.6
44,074 + ABZR87_RS00220 0.62 -3.4
44,074 + ABZR87_RS00220 0.62 -2.9
44,074 + ABZR87_RS00220 0.62 -4.6
44,074 + ABZR87_RS00220 0.62 -3.0
44,074 + ABZR87_RS00220 0.62 -4.6
44,074 + ABZR87_RS00220 0.62 -2.2
44,075 - ABZR87_RS00220 0.63 -5.2
44,075 - ABZR87_RS00220 0.63 -2.7
44,182 + ABZR87_RS00220 0.74 -3.4
44,182 + ABZR87_RS00220 0.74 -1.8
44,182 + ABZR87_RS00220 0.74 -3.3
44,183 - ABZR87_RS00220 0.74 -2.2
44,183 - ABZR87_RS00220 0.74 -3.3
44,183 - ABZR87_RS00220 0.74 -3.1
44,320 + ABZR87_RS00220 0.89 -2.4
44,320 + ABZR87_RS00220 0.89 -3.1
44,320 + ABZR87_RS00220 0.89 -2.6
44,339 - -2.2
44,339 - -1.9
44,339 - -4.0
44,339 - -2.9
44,417 - -0.2
44,819 + ABZR87_RS00225 0.30 -0.4
44,819 + ABZR87_RS00225 0.30 -0.1
44,969 + ABZR87_RS00225 0.43 +1.6
44,969 + ABZR87_RS00225 0.43 +0.7
44,969 + ABZR87_RS00225 0.43 +2.1
44,979 + ABZR87_RS00225 0.44 +0.5
44,980 - ABZR87_RS00225 0.44 -0.1
45,183 + ABZR87_RS00225 0.61 -0.3
45,184 - ABZR87_RS00225 0.61 -0.1
45,199 - ABZR87_RS00225 0.62 -0.6
45,199 - ABZR87_RS00225 0.62 +1.0
45,260 + ABZR87_RS00225 0.68 -0.6
45,260 + ABZR87_RS00225 0.68 +0.6
45,260 + ABZR87_RS00225 0.68 +0.7
45,260 + ABZR87_RS00225 0.68 +0.7
45,260 + ABZR87_RS00225 0.68 -0.2
45,261 - ABZR87_RS00225 0.68 +0.6
45,261 - ABZR87_RS00225 0.68 +0.1
45,261 - ABZR87_RS00225 0.68 +0.5
45,261 - ABZR87_RS00225 0.68 -0.8
45,261 - ABZR87_RS00225 0.68 +1.4
45,359 + ABZR87_RS00225 0.76 -0.2
45,359 + ABZR87_RS00225 0.76 +0.4
45,359 + ABZR87_RS00225 0.76 -0.0
45,359 + ABZR87_RS00225 0.76 +1.0
45,359 + ABZR87_RS00225 0.76 +0.4
45,359 + ABZR87_RS00225 0.76 +0.1
45,359 + ABZR87_RS00225 0.76 -0.1
45,359 + ABZR87_RS00225 0.76 -0.8
45,360 - ABZR87_RS00225 0.76 +0.0
45,360 - ABZR87_RS00225 0.76 -0.5
45,360 - ABZR87_RS00225 0.76 +0.1
45,360 - ABZR87_RS00225 0.76 -1.1
45,360 - ABZR87_RS00225 0.76 +0.4
45,360 - ABZR87_RS00225 0.76 -0.6
45,360 - ABZR87_RS00225 0.76 -1.5
45,360 - ABZR87_RS00225 0.76 -0.6
45,360 - ABZR87_RS00225 0.76 +2.3
45,360 - ABZR87_RS00225 0.76 +2.0
45,364 - ABZR87_RS00225 0.76 -0.0
45,364 - ABZR87_RS00225 0.76 -0.3

Or see this region's nucleotide sequence