Experiment: Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cheV-1 and DVU0057 are separated by 259 nucleotides DVU0057 and DVU0058 overlap by 4 nucleotides DVU0058 and DVU0059 overlap by 4 nucleotides
DVU0056: cheV-1 - chemotaxis protein CheV (TIGR), at 62,676 to 63,629
cheV-1
DVU0057: DVU0057 - transcriptional regulator, TetR family (TIGR), at 63,889 to 64,530
DVU0057
DVU0058: DVU0058 - efflux transporter, RND family, MFP subunit (TIGR), at 64,527 to 65,678
DVU0058
DVU0059: DVU0059 - AcrB/AcrD/AcrF family protein (TIGR), at 65,675 to 69,385
DVU0059
Position (kb) 64
65
66 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 63.537 kb on + strand at 63.538 kb on - strand at 63.545 kb on - strand at 63.579 kb on + strand at 63.741 kb on + strand at 63.824 kb on + strand at 63.824 kb on + strand at 63.831 kb on - strand at 64.007 kb on + strand, within DVU0057 at 64.077 kb on + strand, within DVU0057 at 64.150 kb on + strand, within DVU0057 at 64.229 kb on + strand, within DVU0057 at 64.229 kb on + strand, within DVU0057 at 64.229 kb on + strand, within DVU0057 at 64.299 kb on - strand, within DVU0057 at 64.345 kb on + strand, within DVU0057 at 64.348 kb on - strand, within DVU0057 at 64.414 kb on + strand, within DVU0057 at 64.416 kb on + strand, within DVU0057 at 64.416 kb on + strand, within DVU0057 at 64.421 kb on + strand, within DVU0057 at 64.421 kb on + strand, within DVU0057 at 64.590 kb on - strand at 64.600 kb on - strand at 64.600 kb on - strand at 64.648 kb on - strand, within DVU0058 at 64.649 kb on + strand, within DVU0058 at 64.675 kb on + strand, within DVU0058 at 64.675 kb on + strand, within DVU0058 at 64.675 kb on + strand, within DVU0058 at 64.683 kb on - strand, within DVU0058 at 64.689 kb on + strand, within DVU0058 at 64.702 kb on - strand, within DVU0058 at 64.743 kb on + strand, within DVU0058 at 64.819 kb on - strand, within DVU0058 at 64.860 kb on - strand, within DVU0058 at 64.884 kb on + strand, within DVU0058 at 64.907 kb on + strand, within DVU0058 at 64.915 kb on - strand, within DVU0058 at 64.917 kb on + strand, within DVU0058 at 64.925 kb on - strand, within DVU0058 at 64.952 kb on + strand, within DVU0058 at 64.999 kb on - strand, within DVU0058 at 65.050 kb on - strand, within DVU0058 at 65.073 kb on + strand, within DVU0058 at 65.073 kb on + strand, within DVU0058 at 65.073 kb on + strand, within DVU0058 at 65.115 kb on + strand, within DVU0058 at 65.116 kb on - strand, within DVU0058 at 65.151 kb on - strand, within DVU0058 at 65.177 kb on + strand, within DVU0058 at 65.185 kb on - strand, within DVU0058 at 65.185 kb on - strand, within DVU0058 at 65.185 kb on - strand, within DVU0058 at 65.210 kb on + strand, within DVU0058 at 65.210 kb on + strand, within DVU0058 at 65.210 kb on + strand, within DVU0058 at 65.210 kb on + strand, within DVU0058 at 65.218 kb on - strand, within DVU0058 at 65.235 kb on + strand, within DVU0058 at 65.246 kb on + strand, within DVU0058 at 65.255 kb on - strand, within DVU0058 at 65.257 kb on + strand, within DVU0058 at 65.461 kb on + strand, within DVU0058 at 65.469 kb on + strand, within DVU0058 at 65.540 kb on - strand, within DVU0058 at 65.589 kb on - strand at 65.594 kb on - strand at 65.621 kb on - strand at 65.744 kb on - strand at 65.782 kb on + strand at 65.782 kb on + strand at 65.782 kb on + strand at 65.782 kb on + strand at 65.790 kb on - strand at 65.790 kb on - strand at 65.798 kb on - strand at 65.818 kb on + strand at 65.876 kb on - strand at 65.946 kb on - strand at 65.953 kb on + strand at 66.014 kb on - strand at 66.019 kb on + strand at 66.022 kb on - strand at 66.024 kb on + strand at 66.024 kb on + strand at 66.081 kb on + strand, within DVU0059 at 66.118 kb on + strand, within DVU0059 at 66.120 kb on + strand, within DVU0059 at 66.120 kb on + strand, within DVU0059 at 66.128 kb on - strand, within DVU0059 at 66.128 kb on - strand, within DVU0059 at 66.128 kb on - strand, within DVU0059 at 66.167 kb on - strand, within DVU0059 at 66.230 kb on + strand, within DVU0059 at 66.241 kb on + strand, within DVU0059 at 66.243 kb on - strand, within DVU0059 at 66.297 kb on - strand, within DVU0059 at 66.351 kb on - strand, within DVU0059 at 66.437 kb on + strand, within DVU0059 at 66.445 kb on - strand, within DVU0059 at 66.445 kb on - strand, within DVU0059 at 66.471 kb on + strand, within DVU0059 at 66.479 kb on - strand, within DVU0059 at 66.515 kb on + strand, within DVU0059 at 66.621 kb on + strand, within DVU0059
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract remove 63,537 + -0.8 63,538 - +0.4 63,545 - +0.0 63,579 + +0.1 63,741 + +0.2 63,824 + -1.2 63,824 + -0.5 63,831 - +0.2 64,007 + DVU0057 0.18 -0.3 64,077 + DVU0057 0.29 +0.0 64,150 + DVU0057 0.41 +0.9 64,229 + DVU0057 0.53 +0.7 64,229 + DVU0057 0.53 +1.1 64,229 + DVU0057 0.53 +1.6 64,299 - DVU0057 0.64 +1.0 64,345 + DVU0057 0.71 +0.5 64,348 - DVU0057 0.71 +1.3 64,414 + DVU0057 0.82 +0.9 64,416 + DVU0057 0.82 +1.4 64,416 + DVU0057 0.82 +0.8 64,421 + DVU0057 0.83 +2.0 64,421 + DVU0057 0.83 +1.8 64,590 - -1.2 64,600 - -0.3 64,600 - -1.5 64,648 - DVU0058 0.11 -0.8 64,649 + DVU0058 0.11 -1.5 64,675 + DVU0058 0.13 -0.8 64,675 + DVU0058 0.13 -0.7 64,675 + DVU0058 0.13 -0.8 64,683 - DVU0058 0.14 -1.2 64,689 + DVU0058 0.14 -1.1 64,702 - DVU0058 0.15 -0.3 64,743 + DVU0058 0.19 -1.3 64,819 - DVU0058 0.25 -0.8 64,860 - DVU0058 0.29 -1.5 64,884 + DVU0058 0.31 -1.6 64,907 + DVU0058 0.33 -1.9 64,915 - DVU0058 0.34 -1.6 64,917 + DVU0058 0.34 -2.3 64,925 - DVU0058 0.35 -1.0 64,952 + DVU0058 0.37 -2.2 64,999 - DVU0058 0.41 -1.2 65,050 - DVU0058 0.45 -1.2 65,073 + DVU0058 0.47 -1.3 65,073 + DVU0058 0.47 -0.5 65,073 + DVU0058 0.47 -1.0 65,115 + DVU0058 0.51 -1.7 65,116 - DVU0058 0.51 -1.5 65,151 - DVU0058 0.54 -1.2 65,177 + DVU0058 0.56 -0.6 65,185 - DVU0058 0.57 -2.8 65,185 - DVU0058 0.57 -1.6 65,185 - DVU0058 0.57 -0.9 65,210 + DVU0058 0.59 -0.7 65,210 + DVU0058 0.59 -1.6 65,210 + DVU0058 0.59 -1.6 65,210 + DVU0058 0.59 +0.0 65,218 - DVU0058 0.60 -1.7 65,235 + DVU0058 0.61 -1.2 65,246 + DVU0058 0.62 -1.7 65,255 - DVU0058 0.63 -1.0 65,257 + DVU0058 0.63 -1.5 65,461 + DVU0058 0.81 -1.8 65,469 + DVU0058 0.82 -2.0 65,540 - DVU0058 0.88 -0.4 65,589 - -0.3 65,594 - -0.5 65,621 - -1.4 65,744 - -2.5 65,782 + -1.9 65,782 + -0.9 65,782 + -0.3 65,782 + -1.5 65,790 - -2.7 65,790 - -1.2 65,798 - +0.2 65,818 + -1.1 65,876 - -0.4 65,946 - -2.4 65,953 + -1.5 66,014 - -1.2 66,019 + +0.0 66,022 - -1.1 66,024 + -1.2 66,024 + -1.3 66,081 + DVU0059 0.11 -1.2 66,118 + DVU0059 0.12 -0.5 66,120 + DVU0059 0.12 +0.2 66,120 + DVU0059 0.12 -1.4 66,128 - DVU0059 0.12 +0.2 66,128 - DVU0059 0.12 -1.2 66,128 - DVU0059 0.12 -1.5 66,167 - DVU0059 0.13 -1.4 66,230 + DVU0059 0.15 +0.2 66,241 + DVU0059 0.15 +0.4 66,243 - DVU0059 0.15 -1.6 66,297 - DVU0059 0.17 +0.1 66,351 - DVU0059 0.18 -2.4 66,437 + DVU0059 0.21 -1.8 66,445 - DVU0059 0.21 -2.2 66,445 - DVU0059 0.21 -1.5 66,471 + DVU0059 0.21 -1.4 66,479 - DVU0059 0.22 -0.5 66,515 + DVU0059 0.23 -1.6 66,621 + DVU0059 0.25 -0.1
Or see this region's nucleotide sequence