Experiment: Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU3257 and murA are separated by 133 nucleotides murA and tRNA-His are separated by 91 nucleotides tRNA-His and xth are separated by 784 nucleotides
DVU3257: DVU3257 - DNA internalization-related competence protein ComEC/Rec2 (TIGR), at 3,429,560 to 3,432,484
DVU3257
DVU3258: murA - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (TIGR), at 3,432,618 to 3,433,871
murA
DVU_tRNA-His-1: tRNA-His - tRNA with anticodon GTG for His (VIMSS-AUTO), at 3,433,963 to 3,434,038
tRNA-His
DVU3259: xth - exodeoxyribonuclease III (TIGR), at 3,434,823 to 3,435,596
xth
Position (kb)
3432
3433
3434 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3431.625 kb on - strand, within DVU3257 at 3431.649 kb on + strand, within DVU3257 at 3431.676 kb on + strand, within DVU3257 at 3431.679 kb on - strand, within DVU3257 at 3431.747 kb on - strand, within DVU3257 at 3431.752 kb on - strand, within DVU3257 at 3431.752 kb on - strand, within DVU3257 at 3431.752 kb on - strand, within DVU3257 at 3431.754 kb on - strand, within DVU3257 at 3431.814 kb on + strand, within DVU3257 at 3431.847 kb on - strand, within DVU3257 at 3431.889 kb on + strand, within DVU3257 at 3431.956 kb on - strand, within DVU3257 at 3431.967 kb on + strand, within DVU3257 at 3431.977 kb on + strand, within DVU3257 at 3431.988 kb on + strand, within DVU3257 at 3432.047 kb on + strand, within DVU3257 at 3432.100 kb on - strand, within DVU3257 at 3432.240 kb on + strand at 3432.251 kb on - strand at 3432.255 kb on - strand at 3432.272 kb on - strand at 3432.309 kb on + strand at 3432.311 kb on - strand at 3432.329 kb on + strand at 3432.331 kb on + strand at 3432.331 kb on - strand at 3432.339 kb on - strand at 3432.435 kb on + strand at 3432.473 kb on + strand at 3432.479 kb on + strand at 3432.527 kb on - strand at 3432.583 kb on + strand at 3432.626 kb on - strand at 3434.095 kb on - strand at 3434.132 kb on + strand at 3434.246 kb on + strand at 3434.284 kb on - strand at 3434.337 kb on + strand at 3434.373 kb on - strand at 3434.373 kb on - strand at 3434.423 kb on + strand at 3434.561 kb on - strand at 3434.599 kb on + strand at 3434.635 kb on - strand at 3434.636 kb on + strand at 3434.642 kb on + strand at 3434.649 kb on + strand at 3434.651 kb on - strand at 3434.703 kb on - strand at 3434.751 kb on + strand at 3434.768 kb on - strand at 3434.769 kb on - strand at 3434.776 kb on + strand at 3434.784 kb on - strand at 3434.809 kb on + strand at 3434.865 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract remove 3,431,625 - DVU3257 0.71 +0.3 3,431,649 + DVU3257 0.71 +0.8 3,431,676 + DVU3257 0.72 +0.5 3,431,679 - DVU3257 0.72 -0.2 3,431,747 - DVU3257 0.75 +1.0 3,431,752 - DVU3257 0.75 +0.1 3,431,752 - DVU3257 0.75 -0.3 3,431,752 - DVU3257 0.75 -0.3 3,431,754 - DVU3257 0.75 -0.3 3,431,814 + DVU3257 0.77 +0.3 3,431,847 - DVU3257 0.78 +0.0 3,431,889 + DVU3257 0.80 +0.4 3,431,956 - DVU3257 0.82 -0.1 3,431,967 + DVU3257 0.82 +0.9 3,431,977 + DVU3257 0.83 -0.1 3,431,988 + DVU3257 0.83 -0.5 3,432,047 + DVU3257 0.85 -0.3 3,432,100 - DVU3257 0.87 +0.2 3,432,240 + +0.4 3,432,251 - -0.6 3,432,255 - -0.0 3,432,272 - +0.6 3,432,309 + -2.0 3,432,311 - -0.6 3,432,329 + -1.6 3,432,331 + -0.8 3,432,331 - +0.0 3,432,339 - +0.4 3,432,435 + +0.3 3,432,473 + -1.0 3,432,479 + +0.0 3,432,527 - +0.5 3,432,583 + +0.3 3,432,626 - -0.1 3,434,095 - +0.0 3,434,132 + +0.1 3,434,246 + +0.9 3,434,284 - -0.3 3,434,337 + -0.1 3,434,373 - -0.3 3,434,373 - -0.2 3,434,423 + -0.4 3,434,561 - -0.2 3,434,599 + -2.5 3,434,635 - -0.5 3,434,636 + +0.6 3,434,642 + +1.3 3,434,649 + +1.2 3,434,651 - -0.4 3,434,703 - -0.3 3,434,751 + -0.1 3,434,768 - +0.1 3,434,769 - +0.2 3,434,776 + +0.0 3,434,784 - +2.0 3,434,809 + +1.2 3,434,865 + -0.6
Or see this region's nucleotide sequence