Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3258

Experiment: Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3257 and murA are separated by 133 nucleotidesmurA and tRNA-His are separated by 91 nucleotidestRNA-His and xth are separated by 784 nucleotides DVU3257: DVU3257 - DNA internalization-related competence protein ComEC/Rec2 (TIGR), at 3,429,560 to 3,432,484 DVU3257 DVU3258: murA - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (TIGR), at 3,432,618 to 3,433,871 murA DVU_tRNA-His-1: tRNA-His - tRNA with anticodon GTG for His (VIMSS-AUTO), at 3,433,963 to 3,434,038 tRNA-His DVU3259: xth - exodeoxyribonuclease III (TIGR), at 3,434,823 to 3,435,596 xth Position (kb) 3432 3433 3434Strain fitness (log2 ratio) -2 -1 0 1 2at 3431.625 kb on - strand, within DVU3257at 3431.649 kb on + strand, within DVU3257at 3431.676 kb on + strand, within DVU3257at 3431.679 kb on - strand, within DVU3257at 3431.747 kb on - strand, within DVU3257at 3431.752 kb on - strand, within DVU3257at 3431.752 kb on - strand, within DVU3257at 3431.752 kb on - strand, within DVU3257at 3431.754 kb on - strand, within DVU3257at 3431.814 kb on + strand, within DVU3257at 3431.847 kb on - strand, within DVU3257at 3431.889 kb on + strand, within DVU3257at 3431.956 kb on - strand, within DVU3257at 3431.967 kb on + strand, within DVU3257at 3431.977 kb on + strand, within DVU3257at 3431.988 kb on + strand, within DVU3257at 3432.047 kb on + strand, within DVU3257at 3432.100 kb on - strand, within DVU3257at 3432.240 kb on + strandat 3432.251 kb on - strandat 3432.255 kb on - strandat 3432.272 kb on - strandat 3432.309 kb on + strandat 3432.311 kb on - strandat 3432.329 kb on + strandat 3432.331 kb on + strandat 3432.331 kb on - strandat 3432.339 kb on - strandat 3432.435 kb on + strandat 3432.473 kb on + strandat 3432.479 kb on + strandat 3432.527 kb on - strandat 3432.583 kb on + strandat 3432.626 kb on - strandat 3434.095 kb on - strandat 3434.132 kb on + strandat 3434.246 kb on + strandat 3434.284 kb on - strandat 3434.337 kb on + strandat 3434.373 kb on - strandat 3434.373 kb on - strandat 3434.423 kb on + strandat 3434.561 kb on - strandat 3434.599 kb on + strandat 3434.635 kb on - strandat 3434.636 kb on + strandat 3434.642 kb on + strandat 3434.649 kb on + strandat 3434.651 kb on - strandat 3434.703 kb on - strandat 3434.751 kb on + strandat 3434.768 kb on - strandat 3434.769 kb on - strandat 3434.776 kb on + strandat 3434.784 kb on - strandat 3434.809 kb on + strandat 3434.865 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract
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3,431,625 - DVU3257 0.71 +0.3
3,431,649 + DVU3257 0.71 +0.8
3,431,676 + DVU3257 0.72 +0.5
3,431,679 - DVU3257 0.72 -0.2
3,431,747 - DVU3257 0.75 +1.0
3,431,752 - DVU3257 0.75 +0.1
3,431,752 - DVU3257 0.75 -0.3
3,431,752 - DVU3257 0.75 -0.3
3,431,754 - DVU3257 0.75 -0.3
3,431,814 + DVU3257 0.77 +0.3
3,431,847 - DVU3257 0.78 +0.0
3,431,889 + DVU3257 0.80 +0.4
3,431,956 - DVU3257 0.82 -0.1
3,431,967 + DVU3257 0.82 +0.9
3,431,977 + DVU3257 0.83 -0.1
3,431,988 + DVU3257 0.83 -0.5
3,432,047 + DVU3257 0.85 -0.3
3,432,100 - DVU3257 0.87 +0.2
3,432,240 + +0.4
3,432,251 - -0.6
3,432,255 - -0.0
3,432,272 - +0.6
3,432,309 + -2.0
3,432,311 - -0.6
3,432,329 + -1.6
3,432,331 + -0.8
3,432,331 - +0.0
3,432,339 - +0.4
3,432,435 + +0.3
3,432,473 + -1.0
3,432,479 + +0.0
3,432,527 - +0.5
3,432,583 + +0.3
3,432,626 - -0.1
3,434,095 - +0.0
3,434,132 + +0.1
3,434,246 + +0.9
3,434,284 - -0.3
3,434,337 + -0.1
3,434,373 - -0.3
3,434,373 - -0.2
3,434,423 + -0.4
3,434,561 - -0.2
3,434,599 + -2.5
3,434,635 - -0.5
3,434,636 + +0.6
3,434,642 + +1.3
3,434,649 + +1.2
3,434,651 - -0.4
3,434,703 - -0.3
3,434,751 + -0.1
3,434,768 - +0.1
3,434,769 - +0.2
3,434,776 + +0.0
3,434,784 - +2.0
3,434,809 + +1.2
3,434,865 + -0.6

Or see this region's nucleotide sequence