Experiment: Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU3202 and DORF46408 overlap by 4 nucleotides DORF46408 and holB are separated by 180 nucleotides holB and purA are separated by 51 nucleotides
DVU3202: DVU3202 - hydrolase, TatD family (TIGR), at 3,365,112 to 3,365,948
DVU3202
DORF46408: DORF46408 - no description, at 3,365,945 to 3,366,082
DORF46408
DVU3203: holB - DNA polymerase III, delta prime subunit, putative (TIGR), at 3,366,263 to 3,367,180
holB
DVU3204: purA - adenylosuccinate synthetase (TIGR), at 3,367,232 to 3,368,512
purA
Position (kb)
3366
3367
3368 Strain fitness (log2 ratio)
-1
0
1 at 3365.302 kb on + strand, within DVU3202 at 3365.354 kb on + strand, within DVU3202 at 3365.406 kb on + strand, within DVU3202 at 3365.414 kb on - strand, within DVU3202 at 3365.541 kb on + strand, within DVU3202 at 3365.549 kb on - strand, within DVU3202 at 3365.585 kb on + strand, within DVU3202 at 3365.586 kb on - strand, within DVU3202 at 3365.702 kb on + strand, within DVU3202 at 3365.705 kb on - strand, within DVU3202 at 3365.726 kb on + strand, within DVU3202 at 3365.734 kb on - strand, within DVU3202 at 3365.734 kb on - strand, within DVU3202 at 3365.779 kb on + strand, within DVU3202 at 3365.867 kb on + strand at 3365.868 kb on + strand at 3365.885 kb on + strand at 3365.885 kb on + strand at 3365.886 kb on - strand at 3365.956 kb on - strand at 3365.958 kb on + strand at 3365.977 kb on - strand, within DORF46408 at 3365.998 kb on + strand, within DORF46408 at 3365.999 kb on - strand, within DORF46408 at 3366.063 kb on - strand, within DORF46408 at 3366.282 kb on + strand at 3367.148 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract remove 3,365,302 + DVU3202 0.23 +0.1 3,365,354 + DVU3202 0.29 +0.3 3,365,406 + DVU3202 0.35 +0.8 3,365,414 - DVU3202 0.36 -0.4 3,365,541 + DVU3202 0.51 -0.9 3,365,549 - DVU3202 0.52 -1.1 3,365,585 + DVU3202 0.57 -0.6 3,365,586 - DVU3202 0.57 +0.7 3,365,702 + DVU3202 0.70 -1.7 3,365,705 - DVU3202 0.71 -0.3 3,365,726 + DVU3202 0.73 -1.0 3,365,734 - DVU3202 0.74 +0.2 3,365,734 - DVU3202 0.74 +0.3 3,365,779 + DVU3202 0.80 +0.1 3,365,867 + +1.3 3,365,868 + -0.2 3,365,885 + -0.2 3,365,885 + -0.6 3,365,886 - -0.2 3,365,956 - +0.7 3,365,958 + -0.2 3,365,977 - DORF46408 0.23 -0.1 3,365,998 + DORF46408 0.38 -1.4 3,365,999 - DORF46408 0.39 +0.2 3,366,063 - DORF46408 0.86 -0.6 3,366,282 + +0.4 3,367,148 - -0.4
Or see this region's nucleotide sequence