Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2509

Experiment: Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmurF and murE overlap by 10 nucleotidesmurE and DVU2510 overlap by 4 nucleotides DVU2508: murF - UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase (TIGR), at 2,620,270 to 2,621,706 murF DVU2509: murE - UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (TIGR), at 2,621,697 to 2,623,157 murE DVU2510: DVU2510 - penicillin-binding protein (TIGR), at 2,623,154 to 2,625,226 DVU2510 Position (kb) 2621 2622 2623 2624Strain fitness (log2 ratio) -1 0 1at 2621.701 kb on - strandat 2623.243 kb on - strandat 2623.406 kb on - strand, within DVU2510

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract
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2,621,701 - +0.2
2,623,243 - +0.1
2,623,406 - DVU2510 0.12 +1.1

Or see this region's nucleotide sequence