Experiment: Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rpsF and rpsR are separated by 0 nucleotides rpsR and rplI are separated by 12 nucleotides rplI and dnaB overlap by 50 nucleotides dnaB and DVU0961 are separated by 401 nucleotides
DVU0956: rpsF - ribosomal protein S6 (TIGR), at 1,051,480 to 1,051,785
rpsF
DVU0957: rpsR - ribosomal protein S18 (TIGR), at 1,051,786 to 1,052,049
rpsR
DVU0958: rplI - ribosomal protein L9 (TIGR), at 1,052,062 to 1,052,565
rplI
DVU0959: dnaB - replicative DNA helicase (TIGR), at 1,052,516 to 1,053,997
dnaB
DVU0961: DVU0961 - conserved hypothetical protein (TIGR), at 1,054,399 to 1,058,463
DVU0961
Position (kb)
1052
1053
1054 Strain fitness (log2 ratio)
-2
-1
0
1 at 1054.089 kb on + strand at 1054.089 kb on + strand at 1054.121 kb on - strand at 1054.191 kb on - strand at 1054.287 kb on + strand at 1054.295 kb on + strand at 1054.311 kb on + strand at 1054.311 kb on + strand at 1054.321 kb on - strand at 1054.323 kb on + strand at 1054.323 kb on + strand at 1054.364 kb on + strand at 1054.459 kb on - strand at 1054.505 kb on + strand at 1054.609 kb on + strand at 1054.617 kb on - strand at 1054.785 kb on + strand at 1054.856 kb on + strand, within DVU0961 at 1054.865 kb on - strand, within DVU0961 at 1054.989 kb on - strand, within DVU0961
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract remove 1,054,089 + -2.4 1,054,089 + +0.5 1,054,121 - -0.0 1,054,191 - -0.6 1,054,287 + -0.8 1,054,295 + -0.3 1,054,311 + -0.1 1,054,311 + +1.2 1,054,321 - +0.1 1,054,323 + -1.6 1,054,323 + +0.4 1,054,364 + +0.3 1,054,459 - +0.1 1,054,505 + +0.5 1,054,609 + -1.3 1,054,617 - -1.1 1,054,785 + -0.1 1,054,856 + DVU0961 0.11 -0.4 1,054,865 - DVU0961 0.11 -0.3 1,054,989 - DVU0961 0.15 -0.3
Or see this region's nucleotide sequence