Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0786

Experiment: Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrodA and DVU0786 overlap by 4 nucleotidesDVU0786 and DVU0787 overlap by 17 nucleotidesDVU0787 and mreC are separated by 6 nucleotides DVU0785: rodA - rod shape-determining protein RodA (TIGR), at 871,370 to 872,485 rodA DVU0786: DVU0786 - penicillin-binding protein (TIGR), at 872,482 to 874,269 DVU0786 DVU0787: DVU0787 - hypothetical protein (TIGR), at 874,253 to 874,723 DVU0787 DVU0788: mreC - rod shape-determining protein MreC (TIGR), at 874,730 to 875,644 mreC Position (kb) 872 873 874 875Strain fitness (log2 ratio) -2 -1 0 1at 872.487 kb on - strandat 872.494 kb on - strandat 872.494 kb on - strandat 874.327 kb on - strand, within DVU0787at 874.493 kb on - strand, within DVU0787at 874.525 kb on - strand, within DVU0787at 874.625 kb on - strand, within DVU0787at 874.778 kb on - strandat 874.778 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract
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872,487 - -0.7
872,494 - -2.4
872,494 - -0.0
874,327 - DVU0787 0.16 -2.3
874,493 - DVU0787 0.51 +0.3
874,525 - DVU0787 0.58 -2.4
874,625 - DVU0787 0.79 -0.9
874,778 - -0.6
874,778 - -2.3

Or see this region's nucleotide sequence