Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0663

Experiment: Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcysE and cysK are separated by 167 nucleotidescysK and DVU0664 are separated by 127 nucleotides DVU0662: cysE - serine O-acetyltransferase (TIGR), at 733,256 to 734,227 cysE DVU0663: cysK - cysteine synthase A (TIGR), at 734,395 to 735,321 cysK DVU0664: DVU0664 - cysteine desulfurase (TIGR), at 735,449 to 736,633 DVU0664 Position (kb) 734 735 736Strain fitness (log2 ratio) -1 0 1at 734.283 kb on + strandat 734.342 kb on + strandat 734.391 kb on - strandat 735.316 kb on + strandat 735.336 kb on - strandat 735.341 kb on - strandat 735.355 kb on + strandat 735.369 kb on - strandat 735.383 kb on + strandat 735.383 kb on + strandat 735.506 kb on - strandat 735.618 kb on + strand, within DVU0664at 735.618 kb on + strand, within DVU0664at 735.725 kb on - strand, within DVU0664at 735.848 kb on - strand, within DVU0664at 735.901 kb on + strand, within DVU0664at 735.923 kb on + strand, within DVU0664at 736.076 kb on - strand, within DVU0664at 736.112 kb on + strand, within DVU0664

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract
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734,283 + -0.3
734,342 + -0.6
734,391 - -0.4
735,316 + -0.7
735,336 - +0.0
735,341 - +0.8
735,355 + -1.3
735,369 - -0.1
735,383 + +0.7
735,383 + -0.2
735,506 - +0.5
735,618 + DVU0664 0.14 +0.5
735,618 + DVU0664 0.14 -0.2
735,725 - DVU0664 0.23 -1.3
735,848 - DVU0664 0.34 -0.4
735,901 + DVU0664 0.38 -1.2
735,923 + DVU0664 0.40 -1.4
736,076 - DVU0664 0.53 -0.9
736,112 + DVU0664 0.56 +1.2

Or see this region's nucleotide sequence