Strain Fitness in Shewanella oneidensis MR-1 around SO0646

Experiment: 20 mM D,L-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0644 and SO0645 are separated by 57 nucleotidesSO0645 and SO0646 overlap by 14 nucleotidesSO0646 and SO0647 overlap by 1 nucleotidesSO0647 and SO0648 are separated by 4 nucleotidesSO0648 and SO0649 are separated by 18 nucleotides SO0644: SO0644 - prophage MuSo1, DNA transposition protein, putative (NCBI ptt file), at 672,706 to 673,425 SO0644 SO0645: SO0645 - hypothetical protein (NCBI ptt file), at 673,483 to 674,028 SO0645 SO0646: SO0646 - hypothetical protein (NCBI ptt file), at 674,015 to 674,509 SO0646 SO0647: SO0647 - hypothetical protein (NCBI ptt file), at 674,509 to 674,724 SO0647 SO0648: SO0648 - conserved hypothetical protein (NCBI ptt file), at 674,729 to 675,355 SO0648 SO0649: SO0649 - hypothetical protein (NCBI ptt file), at 675,374 to 675,646 SO0649 Position (kb) 674 675Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 673.094 kb on - strand, within SO0644at 673.104 kb on + strand, within SO0644at 673.104 kb on + strand, within SO0644at 673.106 kb on + strand, within SO0644at 673.142 kb on + strand, within SO0644at 673.142 kb on + strand, within SO0644at 673.142 kb on + strand, within SO0644at 673.161 kb on + strand, within SO0644at 673.216 kb on - strand, within SO0644at 673.258 kb on - strand, within SO0644at 673.290 kb on + strand, within SO0644at 673.306 kb on - strand, within SO0644at 673.337 kb on - strand, within SO0644at 673.433 kb on - strandat 673.493 kb on + strandat 673.503 kb on + strandat 673.511 kb on + strandat 673.511 kb on + strandat 673.511 kb on - strandat 673.539 kb on - strand, within SO0645at 673.558 kb on + strand, within SO0645at 673.558 kb on + strand, within SO0645at 673.558 kb on + strandat 673.558 kb on + strand, within SO0645at 673.558 kb on + strand, within SO0645at 673.558 kb on + strand, within SO0645at 673.558 kb on + strand, within SO0645at 673.558 kb on + strand, within SO0645at 673.566 kb on - strand, within SO0645at 673.566 kb on - strand, within SO0645at 673.566 kb on - strand, within SO0645at 673.566 kb on - strand, within SO0645at 673.566 kb on - strand, within SO0645at 673.571 kb on + strand, within SO0645at 673.571 kb on + strand, within SO0645at 673.571 kb on + strand, within SO0645at 673.579 kb on - strand, within SO0645at 673.589 kb on - strand, within SO0645at 673.626 kb on + strand, within SO0645at 673.709 kb on - strand, within SO0645at 673.778 kb on + strand, within SO0645at 673.778 kb on + strand, within SO0645at 673.778 kb on + strand, within SO0645at 673.778 kb on + strand, within SO0645at 673.786 kb on - strand, within SO0645at 673.786 kb on - strand, within SO0645at 673.786 kb on - strand, within SO0645at 673.786 kb on - strand, within SO0645at 673.786 kb on - strand, within SO0645at 673.837 kb on + strand, within SO0645at 673.902 kb on - strand, within SO0645at 673.948 kb on - strand, within SO0645at 674.039 kb on + strandat 674.066 kb on - strand, within SO0646at 674.118 kb on - strand, within SO0646at 674.186 kb on + strand, within SO0646at 674.188 kb on + strand, within SO0646at 674.188 kb on + strand, within SO0646at 674.193 kb on + strand, within SO0646at 674.194 kb on - strand, within SO0646at 674.201 kb on - strand, within SO0646at 674.262 kb on + strand, within SO0646at 674.270 kb on - strand, within SO0646at 674.332 kb on + strand, within SO0646at 674.446 kb on + strand, within SO0646at 674.446 kb on + strand, within SO0646at 674.446 kb on + strand, within SO0646at 674.454 kb on - strand, within SO0646at 674.467 kb on + strandat 674.511 kb on - strandat 674.528 kb on + strandat 674.531 kb on - strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.546 kb on + strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.554 kb on - strand, within SO0647at 674.601 kb on + strand, within SO0647at 674.652 kb on + strand, within SO0647at 674.652 kb on + strand, within SO0647at 674.660 kb on - strand, within SO0647at 674.704 kb on - strandat 674.828 kb on - strand, within SO0648at 674.850 kb on - strand, within SO0648at 674.900 kb on - strand, within SO0648at 674.938 kb on + strand, within SO0648at 674.943 kb on + strand, within SO0648at 674.948 kb on + strand, within SO0648at 674.958 kb on - strand, within SO0648at 675.012 kb on + strand, within SO0648at 675.045 kb on + strand, within SO0648at 675.147 kb on + strand, within SO0648at 675.302 kb on + strandat 675.345 kb on - strandat 675.350 kb on + strandat 675.365 kb on - strandat 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strandat 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.416 kb on + strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.424 kb on - strand, within SO0649at 675.465 kb on - strand, within SO0649at 675.476 kb on + strand, within SO0649at 675.476 kb on + strand, within SO0649at 675.484 kb on - strand, within SO0649at 675.484 kb on - strand, within SO0649

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Per-strain Table

Position Strand Gene LocusTag Fraction 20 mM D,L-Lactate
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673,094 - SO0644 0.54 -0.4
673,104 + SO0644 0.55 +2.4
673,104 + SO0644 0.55 +1.4
673,106 + SO0644 0.56 +1.1
673,142 + SO0644 0.61 +0.1
673,142 + SO0644 0.61 +1.9
673,142 + SO0644 0.61 +0.6
673,161 + SO0644 0.63 +1.4
673,216 - SO0644 0.71 -0.3
673,258 - SO0644 0.77 -0.8
673,290 + SO0644 0.81 +1.4
673,306 - SO0644 0.83 -0.3
673,337 - SO0644 0.88 -3.2
673,433 - -0.2
673,493 + +0.7
673,503 + +0.9
673,511 + +0.3
673,511 + +1.3
673,511 - +1.0
673,539 - SO0645 0.10 +0.7
673,558 + SO0645 0.14 +1.1
673,558 + SO0645 0.14 +0.5
673,558 + +1.4
673,558 + SO0645 0.14 -0.5
673,558 + SO0645 0.14 -0.1
673,558 + SO0645 0.14 -0.6
673,558 + SO0645 0.14 +0.1
673,558 + SO0645 0.14 +1.2
673,566 - SO0645 0.15 +0.4
673,566 - SO0645 0.15 +1.2
673,566 - SO0645 0.15 -0.8
673,566 - SO0645 0.15 -1.3
673,566 - SO0645 0.15 +0.1
673,571 + SO0645 0.16 +0.7
673,571 + SO0645 0.16 +0.9
673,571 + SO0645 0.16 +0.9
673,579 - SO0645 0.18 -0.9
673,589 - SO0645 0.19 +0.7
673,626 + SO0645 0.26 +2.9
673,709 - SO0645 0.41 +0.1
673,778 + SO0645 0.54 +0.9
673,778 + SO0645 0.54 +1.9
673,778 + SO0645 0.54 +1.5
673,778 + SO0645 0.54 +0.5
673,786 - SO0645 0.55 +0.2
673,786 - SO0645 0.55 +0.9
673,786 - SO0645 0.55 -0.9
673,786 - SO0645 0.55 -0.2
673,786 - SO0645 0.55 -1.0
673,837 + SO0645 0.65 +1.0
673,902 - SO0645 0.77 +0.1
673,948 - SO0645 0.85 +0.1
674,039 + -0.2
674,066 - SO0646 0.10 +0.1
674,118 - SO0646 0.21 +1.0
674,186 + SO0646 0.35 +0.1
674,188 + SO0646 0.35 +0.6
674,188 + SO0646 0.35 -0.5
674,193 + SO0646 0.36 +3.2
674,194 - SO0646 0.36 +0.4
674,201 - SO0646 0.38 +0.1
674,262 + SO0646 0.50 -0.4
674,270 - SO0646 0.52 +0.7
674,332 + SO0646 0.64 +1.1
674,446 + SO0646 0.87 +1.5
674,446 + SO0646 0.87 +0.5
674,446 + SO0646 0.87 +2.8
674,454 - SO0646 0.89 +0.5
674,467 + +2.4
674,511 - +1.2
674,528 + +1.0
674,531 - SO0647 0.10 +0.7
674,546 + SO0647 0.17 +1.1
674,546 + SO0647 0.17 +0.5
674,546 + SO0647 0.17 +1.8
674,546 + SO0647 0.17 +1.1
674,546 + SO0647 0.17 +0.2
674,546 + SO0647 0.17 +1.5
674,546 + SO0647 0.17 +0.6
674,546 + SO0647 0.17 +1.4
674,546 + SO0647 0.17 -0.9
674,546 + SO0647 0.17 +1.3
674,546 + SO0647 0.17 +1.0
674,546 + SO0647 0.17 +2.0
674,546 + SO0647 0.17 +1.5
674,554 - SO0647 0.21 +1.1
674,554 - SO0647 0.21 +0.9
674,554 - SO0647 0.21 +0.9
674,554 - SO0647 0.21 +1.3
674,554 - SO0647 0.21 -0.9
674,554 - SO0647 0.21 +0.8
674,554 - SO0647 0.21 +0.2
674,554 - SO0647 0.21 -0.9
674,554 - SO0647 0.21 +0.5
674,554 - SO0647 0.21 +0.7
674,554 - SO0647 0.21 +1.0
674,554 - SO0647 0.21 -0.2
674,554 - SO0647 0.21 +0.4
674,554 - SO0647 0.21 +0.2
674,554 - SO0647 0.21 +0.8
674,601 + SO0647 0.43 +0.4
674,652 + SO0647 0.66 +1.2
674,652 + SO0647 0.66 +2.3
674,660 - SO0647 0.70 -0.2
674,704 - -1.0
674,828 - SO0648 0.16 -0.5
674,850 - SO0648 0.19 +0.1
674,900 - SO0648 0.27 +0.1
674,938 + SO0648 0.33 +1.3
674,943 + SO0648 0.34 +0.3
674,948 + SO0648 0.35 +1.1
674,958 - SO0648 0.37 +0.2
675,012 + SO0648 0.45 +0.5
675,045 + SO0648 0.50 -0.5
675,147 + SO0648 0.67 +1.4
675,302 + -0.1
675,345 - +0.8
675,350 + +1.4
675,365 - -0.1
675,416 + SO0649 0.15 +0.6
675,416 + SO0649 0.15 +1.3
675,416 + SO0649 0.15 +0.5
675,416 + -1.0
675,416 + SO0649 0.15 +1.4
675,416 + SO0649 0.15 +2.3
675,416 + SO0649 0.15 +0.6
675,416 + SO0649 0.15 +1.7
675,416 + SO0649 0.15 +1.1
675,416 + SO0649 0.15 +0.4
675,416 + SO0649 0.15 +1.0
675,416 + SO0649 0.15 +0.9
675,416 + SO0649 0.15 +0.9
675,416 + SO0649 0.15 +0.9
675,416 + SO0649 0.15 +1.0
675,416 + SO0649 0.15 -0.1
675,416 + SO0649 0.15 +0.5
675,416 + SO0649 0.15 +1.0
675,416 + SO0649 0.15 +0.9
675,416 + SO0649 0.15 +0.6
675,416 + SO0649 0.15 +0.3
675,416 + SO0649 0.15 +0.9
675,424 - SO0649 0.18 -0.3
675,424 - SO0649 0.18 -0.5
675,424 - SO0649 0.18 +0.6
675,424 - SO0649 0.18 +0.6
675,424 - SO0649 0.18 +0.1
675,424 - SO0649 0.18 +0.4
675,424 - SO0649 0.18 -0.8
675,424 - SO0649 0.18 -0.1
675,424 - SO0649 0.18 -0.9
675,424 - SO0649 0.18 +0.1
675,424 - SO0649 0.18 +0.7
675,424 - SO0649 0.18 +1.7
675,424 - SO0649 0.18 -0.2
675,424 - SO0649 0.18 +1.3
675,424 - SO0649 0.18 +0.8
675,424 - SO0649 0.18 +1.1
675,424 - SO0649 0.18 +0.2
675,424 - SO0649 0.18 -0.3
675,424 - SO0649 0.18 +0.5
675,424 - SO0649 0.18 -0.5
675,424 - SO0649 0.18 +0.3
675,465 - SO0649 0.33 +0.1
675,476 + SO0649 0.37 +1.0
675,476 + SO0649 0.37 +0.1
675,484 - SO0649 0.40 +0.4
675,484 - SO0649 0.40 -0.6

Or see this region's nucleotide sequence