Experiment: 20 mM D,L-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gmk and SO0362 are separated by 578 nucleotides SO0362 and SO0363 are separated by 158 nucleotides
SO0361: gmk - guanylate kinase (NCBI ptt file), at 370,741 to 371,364
gmk
SO0362: SO0362 - hypothetical protein (NCBI ptt file), at 371,943 to 373,493
SO0362
SO0363: SO0363 - hypothetical protein (NCBI ptt file), at 373,652 to 374,533
SO0363
Position (kb) 371
372
373
374 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 371.535 kb on - strand at 371.535 kb on - strand at 371.558 kb on + strand at 371.558 kb on + strand at 371.558 kb on + strand at 371.558 kb on + strand at 371.558 kb on + strand at 371.558 kb on + strand at 371.566 kb on - strand at 371.566 kb on - strand at 371.566 kb on - strand at 371.566 kb on - strand at 371.566 kb on - strand at 371.566 kb on - strand at 371.947 kb on - strand at 372.042 kb on - strand at 372.141 kb on + strand, within SO0362 at 372.152 kb on + strand, within SO0362 at 372.153 kb on + strand, within SO0362 at 372.171 kb on - strand, within SO0362 at 372.171 kb on - strand, within SO0362 at 372.174 kb on - strand, within SO0362 at 372.200 kb on + strand, within SO0362 at 372.200 kb on + strand, within SO0362 at 372.208 kb on - strand, within SO0362 at 372.208 kb on - strand, within SO0362 at 372.208 kb on - strand, within SO0362 at 372.208 kb on - strand, within SO0362 at 372.208 kb on - strand, within SO0362 at 372.208 kb on - strand, within SO0362 at 372.209 kb on - strand, within SO0362 at 372.214 kb on - strand, within SO0362 at 372.292 kb on + strand, within SO0362 at 372.299 kb on - strand, within SO0362 at 372.346 kb on + strand, within SO0362 at 372.405 kb on - strand, within SO0362 at 372.421 kb on + strand, within SO0362 at 372.526 kb on - strand, within SO0362 at 372.556 kb on + strand, within SO0362 at 372.649 kb on - strand, within SO0362 at 372.662 kb on - strand, within SO0362 at 372.662 kb on - strand, within SO0362 at 372.684 kb on + strand, within SO0362 at 372.725 kb on + strand, within SO0362 at 372.776 kb on + strand, within SO0362 at 373.076 kb on + strand, within SO0362 at 373.149 kb on - strand, within SO0362 at 373.149 kb on - strand, within SO0362 at 373.149 kb on - strand, within SO0362 at 373.177 kb on + strand, within SO0362 at 373.214 kb on + strand, within SO0362 at 373.214 kb on + strand, within SO0362 at 373.235 kb on + strand, within SO0362 at 373.270 kb on + strand, within SO0362 at 373.299 kb on - strand, within SO0362 at 373.429 kb on + strand at 373.437 kb on - strand at 373.487 kb on - strand at 373.525 kb on + strand at 373.525 kb on + strand at 373.728 kb on + strand at 373.728 kb on + strand at 373.728 kb on + strand at 373.728 kb on + strand at 373.728 kb on + strand at 373.728 kb on + strand at 373.736 kb on - strand at 373.736 kb on - strand at 373.736 kb on - strand at 373.736 kb on - strand at 373.737 kb on - strand at 373.830 kb on - strand, within SO0363 at 373.931 kb on + strand, within SO0363 at 373.944 kb on + strand, within SO0363 at 374.089 kb on - strand, within SO0363 at 374.109 kb on - strand, within SO0363 at 374.127 kb on - strand, within SO0363 at 374.137 kb on - strand, within SO0363 at 374.411 kb on + strand, within SO0363 at 374.430 kb on + strand, within SO0363 at 374.430 kb on + strand, within SO0363 at 374.433 kb on - strand, within SO0363 at 374.438 kb on - strand, within SO0363 at 374.467 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 20 mM D,L-Lactate remove 371,535 - +0.6 371,535 - +0.5 371,558 + -1.5 371,558 + -1.1 371,558 + -0.3 371,558 + +0.4 371,558 + -1.4 371,558 + +1.5 371,566 - -0.7 371,566 - +0.2 371,566 - +0.2 371,566 - -0.8 371,566 - +0.8 371,566 - -0.9 371,947 - +1.2 372,042 - -0.4 372,141 + SO0362 0.13 +0.4 372,152 + SO0362 0.13 +0.5 372,153 + SO0362 0.14 +0.8 372,171 - SO0362 0.15 +1.2 372,171 - SO0362 0.15 -1.4 372,174 - SO0362 0.15 -1.2 372,200 + SO0362 0.17 +2.2 372,200 + SO0362 0.17 -1.0 372,208 - SO0362 0.17 +0.6 372,208 - SO0362 0.17 +1.2 372,208 - SO0362 0.17 +2.0 372,208 - SO0362 0.17 +0.7 372,208 - SO0362 0.17 -0.4 372,208 - SO0362 0.17 +0.2 372,209 - SO0362 0.17 -1.2 372,214 - SO0362 0.17 +0.4 372,292 + SO0362 0.23 +0.2 372,299 - SO0362 0.23 +0.4 372,346 + SO0362 0.26 +0.4 372,405 - SO0362 0.30 +0.6 372,421 + SO0362 0.31 +3.0 372,526 - SO0362 0.38 -0.3 372,556 + SO0362 0.40 +0.6 372,649 - SO0362 0.46 +0.5 372,662 - SO0362 0.46 -0.5 372,662 - SO0362 0.46 +0.3 372,684 + SO0362 0.48 -1.8 372,725 + SO0362 0.50 -0.4 372,776 + SO0362 0.54 +0.5 373,076 + SO0362 0.73 -0.3 373,149 - SO0362 0.78 +0.5 373,149 - SO0362 0.78 +0.4 373,149 - SO0362 0.78 +0.3 373,177 + SO0362 0.80 +0.8 373,214 + SO0362 0.82 +0.2 373,214 + SO0362 0.82 +0.8 373,235 + SO0362 0.83 -0.5 373,270 + SO0362 0.86 +0.4 373,299 - SO0362 0.87 +0.1 373,429 + +0.2 373,437 - +0.7 373,487 - +1.9 373,525 + +1.2 373,525 + +1.2 373,728 + +2.8 373,728 + -0.6 373,728 + -0.4 373,728 + +0.2 373,728 + +1.3 373,728 + +0.5 373,736 - +0.4 373,736 - +1.8 373,736 - -0.5 373,736 - +1.0 373,737 - +1.1 373,830 - SO0363 0.20 +0.0 373,931 + SO0363 0.32 -1.8 373,944 + SO0363 0.33 -0.7 374,089 - SO0363 0.50 +1.2 374,109 - SO0363 0.52 -0.2 374,127 - SO0363 0.54 -0.3 374,137 - SO0363 0.55 +0.6 374,411 + SO0363 0.86 +1.2 374,430 + SO0363 0.88 +0.4 374,430 + SO0363 0.88 -1.2 374,433 - SO0363 0.89 +0.2 374,438 - SO0363 0.89 -1.5 374,467 - +0.6
Or see this region's nucleotide sequence