Experiment: 20 mM D,L-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cinA and SO0273 are separated by 96 nucleotides SO0273 and ppc overlap by 1 nucleotides ppc and argC are separated by 698 nucleotides
SO0272: cinA - competence/damage-inducible protein CinA (NCBI ptt file), at 275,264 to 276,538
cinA
SO0273: SO0273 - conserved hypothetical protein (NCBI ptt file), at 276,635 to 277,180
SO0273
SO0274: ppc - phosphoenolpyruvate carboxylase (NCBI ptt file), at 277,180 to 279,825
ppc
SO0275: argC - N-acetyl-gamma-glutamyl-phosphate reductase (NCBI ptt file), at 280,524 to 281,504
argC
Position (kb) 277
278
279
280 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 276.320 kb on + strand, within cinA at 276.569 kb on - strand at 276.778 kb on + strand, within SO0273 at 276.784 kb on - strand, within SO0273 at 276.864 kb on - strand, within SO0273 at 276.888 kb on + strand, within SO0273 at 276.903 kb on - strand, within SO0273 at 277.024 kb on + strand, within SO0273 at 277.102 kb on + strand, within SO0273 at 277.112 kb on + strand, within SO0273 at 277.112 kb on + strand, within SO0273 at 277.143 kb on - strand at 277.371 kb on - strand at 277.403 kb on - strand at 277.427 kb on - strand at 277.447 kb on - strand, within ppc at 277.514 kb on + strand, within ppc at 277.532 kb on + strand, within ppc at 277.655 kb on - strand, within ppc at 277.842 kb on + strand, within ppc at 277.907 kb on + strand, within ppc at 277.935 kb on - strand, within ppc at 277.939 kb on + strand, within ppc at 277.939 kb on + strand, within ppc at 277.939 kb on + strand, within ppc at 277.939 kb on + strand, within ppc at 277.940 kb on - strand, within ppc at 277.947 kb on - strand, within ppc at 277.947 kb on - strand, within ppc at 278.000 kb on - strand, within ppc at 278.163 kb on - strand, within ppc at 278.163 kb on - strand, within ppc at 278.340 kb on - strand, within ppc at 278.459 kb on + strand, within ppc at 278.467 kb on - strand, within ppc at 278.607 kb on - strand, within ppc at 278.729 kb on - strand, within ppc at 278.776 kb on - strand, within ppc at 278.845 kb on - strand, within ppc at 278.981 kb on - strand, within ppc at 279.027 kb on - strand, within ppc at 279.038 kb on + strand, within ppc at 279.149 kb on + strand, within ppc at 279.550 kb on - strand, within ppc at 279.651 kb on + strand at 279.659 kb on - strand at 279.772 kb on + strand at 279.886 kb on + strand at 279.894 kb on - strand at 279.967 kb on + strand at 280.213 kb on - strand at 280.341 kb on + strand at 280.341 kb on - strand at 280.349 kb on - strand at 280.379 kb on + strand at 280.384 kb on + strand at 280.392 kb on - strand at 280.461 kb on - strand at 280.553 kb on + strand at 280.571 kb on + strand at 280.578 kb on + strand at 280.579 kb on - strand at 280.579 kb on - strand at 280.586 kb on - strand at 280.586 kb on - strand at 280.615 kb on - strand at 280.623 kb on - strand, within argC at 280.662 kb on + strand, within argC at 280.670 kb on - strand, within argC at 280.670 kb on - strand, within argC at 280.674 kb on + strand, within argC at 280.674 kb on + strand, within argC at 280.674 kb on + strand, within argC at 280.674 kb on + strand, within argC at 280.674 kb on + strand, within argC at 280.682 kb on - strand, within argC at 280.689 kb on + strand at 280.697 kb on - strand, within argC at 280.704 kb on - strand, within argC at 280.755 kb on - strand, within argC at 280.757 kb on + strand, within argC at 280.820 kb on - strand, within argC
Per-strain Table
Position Strand Gene LocusTag Fraction 20 mM D,L-Lactate remove 276,320 + cinA SO0272 0.83 +0.7 276,569 - +1.1 276,778 + SO0273 0.26 -0.7 276,784 - SO0273 0.27 +1.6 276,864 - SO0273 0.42 +0.0 276,888 + SO0273 0.46 +0.0 276,903 - SO0273 0.49 -0.5 277,024 + SO0273 0.71 +0.5 277,102 + SO0273 0.86 +0.3 277,112 + SO0273 0.87 +0.3 277,112 + SO0273 0.87 +0.8 277,143 - -0.6 277,371 - -5.1 277,403 - -5.3 277,427 - -2.7 277,447 - ppc SO0274 0.10 -2.3 277,514 + ppc SO0274 0.13 -4.8 277,532 + ppc SO0274 0.13 -4.7 277,655 - ppc SO0274 0.18 -3.6 277,842 + ppc SO0274 0.25 -3.2 277,907 + ppc SO0274 0.27 -2.7 277,935 - ppc SO0274 0.29 -2.3 277,939 + ppc SO0274 0.29 -3.4 277,939 + ppc SO0274 0.29 -3.1 277,939 + ppc SO0274 0.29 -4.9 277,939 + ppc SO0274 0.29 -3.6 277,940 - ppc SO0274 0.29 -1.3 277,947 - ppc SO0274 0.29 -4.6 277,947 - ppc SO0274 0.29 -3.9 278,000 - ppc SO0274 0.31 -5.1 278,163 - ppc SO0274 0.37 -3.9 278,163 - ppc SO0274 0.37 +0.3 278,340 - ppc SO0274 0.44 -1.7 278,459 + ppc SO0274 0.48 -4.9 278,467 - ppc SO0274 0.49 -1.7 278,607 - ppc SO0274 0.54 -2.5 278,729 - ppc SO0274 0.59 -1.7 278,776 - ppc SO0274 0.60 -2.7 278,845 - ppc SO0274 0.63 -5.6 278,981 - ppc SO0274 0.68 -3.9 279,027 - ppc SO0274 0.70 -5.0 279,038 + ppc SO0274 0.70 +0.3 279,149 + ppc SO0274 0.74 -3.2 279,550 - ppc SO0274 0.90 -2.9 279,651 + -2.7 279,659 - -3.1 279,772 + -0.7 279,886 + -4.7 279,894 - +1.0 279,967 + -2.6 280,213 - +0.8 280,341 + -2.9 280,341 - -4.9 280,349 - -4.6 280,379 + -1.7 280,384 + -3.5 280,392 - +0.3 280,461 - -4.4 280,553 + +0.3 280,571 + -3.9 280,578 + -3.7 280,579 - -4.0 280,579 - -0.7 280,586 - -4.4 280,586 - -1.3 280,615 - -2.7 280,623 - argC SO0275 0.10 -2.1 280,662 + argC SO0275 0.14 -4.4 280,670 - argC SO0275 0.15 -5.2 280,670 - argC SO0275 0.15 -3.2 280,674 + argC SO0275 0.15 -2.3 280,674 + argC SO0275 0.15 -4.5 280,674 + argC SO0275 0.15 -4.3 280,674 + argC SO0275 0.15 -4.3 280,674 + argC SO0275 0.15 -4.0 280,682 - argC SO0275 0.16 -5.7 280,689 + -2.1 280,697 - argC SO0275 0.18 -3.9 280,704 - argC SO0275 0.18 -2.3 280,755 - argC SO0275 0.24 -4.1 280,757 + argC SO0275 0.24 -3.1 280,820 - argC SO0275 0.30 -4.9
Or see this region's nucleotide sequence