Experiment: Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1639 and DORF12455 are separated by 95 nucleotides DORF12455 and DORF12457 overlap by 23 nucleotides DORF12457 and DVU1641 are separated by 44 nucleotides DVU1641 and DORF12461 are separated by 20 nucleotides DORF12461 and DORF12465 are separated by 39 nucleotides
DVU1639: DVU1639 - conserved domain protein (TIGR), at 1,719,951 to 1,720,946
DVU1639
DORF12455: DORF12455 - SEED: helix-turn-helix protein, CopG family, at 1,721,042 to 1,721,284
DORF12455
DORF12457: DORF12457 - SEED: protein of unknown function DUF497, at 1,721,262 to 1,721,534
DORF12457
DVU1641: DVU1641 - conserved hypothetical protein (TIGR), at 1,721,579 to 1,721,902
DVU1641
DORF12461: DORF12461 - SEED: HigA protein (antitoxin to HigB), at 1,721,923 to 1,722,225
DORF12461
DORF12465: DORF12465 - SEED: HigB toxin protein, at 1,722,265 to 1,722,582
DORF12465
Position (kb)
1721
1722 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1720.050 kb on - strand at 1720.073 kb on + strand, within DVU1639 at 1720.123 kb on - strand, within DVU1639 at 1720.129 kb on - strand, within DVU1639 at 1720.181 kb on + strand, within DVU1639 at 1720.245 kb on - strand, within DVU1639 at 1720.253 kb on - strand, within DVU1639 at 1720.303 kb on + strand, within DVU1639 at 1720.311 kb on - strand, within DVU1639 at 1720.334 kb on - strand, within DVU1639 at 1720.596 kb on + strand, within DVU1639 at 1720.599 kb on - strand, within DVU1639 at 1720.604 kb on - strand, within DVU1639 at 1720.757 kb on - strand, within DVU1639 at 1720.757 kb on - strand, within DVU1639 at 1720.818 kb on + strand, within DVU1639 at 1720.823 kb on + strand, within DVU1639 at 1720.852 kb on - strand at 1720.906 kb on + strand at 1720.913 kb on + strand at 1720.943 kb on + strand at 1721.040 kb on + strand at 1721.114 kb on + strand, within DORF12455 at 1721.228 kb on + strand, within DORF12455 at 1721.597 kb on - strand at 1721.752 kb on + strand, within DVU1641 at 1721.855 kb on + strand, within DVU1641 at 1721.906 kb on - strand at 1721.914 kb on + strand at 1721.923 kb on - strand at 1721.923 kb on - strand at 1721.981 kb on + strand, within DORF12461 at 1721.981 kb on + strand, within DORF12461 at 1722.186 kb on - strand, within DORF12461 at 1722.205 kb on - strand at 1722.249 kb on - strand at 1722.250 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate/Acetate-Sulfite (60/30-40 mM) + 0.1% Yeast Extract remove 1,720,050 - -0.2 1,720,073 + DVU1639 0.12 +2.0 1,720,123 - DVU1639 0.17 -1.6 1,720,129 - DVU1639 0.18 -0.1 1,720,181 + DVU1639 0.23 -0.4 1,720,245 - DVU1639 0.30 +0.0 1,720,253 - DVU1639 0.30 -0.1 1,720,303 + DVU1639 0.35 -0.8 1,720,311 - DVU1639 0.36 +0.6 1,720,334 - DVU1639 0.38 -0.2 1,720,596 + DVU1639 0.65 +0.9 1,720,599 - DVU1639 0.65 -0.9 1,720,604 - DVU1639 0.66 +0.5 1,720,757 - DVU1639 0.81 -0.3 1,720,757 - DVU1639 0.81 -0.5 1,720,818 + DVU1639 0.87 -0.3 1,720,823 + DVU1639 0.88 -0.1 1,720,852 - -2.1 1,720,906 + -0.8 1,720,913 + -1.8 1,720,943 + -0.2 1,721,040 + +0.1 1,721,114 + DORF12455 0.30 -0.3 1,721,228 + DORF12455 0.77 -2.3 1,721,597 - -0.6 1,721,752 + DVU1641 0.53 -0.2 1,721,855 + DVU1641 0.85 -1.1 1,721,906 - +0.4 1,721,914 + +0.1 1,721,923 - -0.2 1,721,923 - +0.6 1,721,981 + DORF12461 0.19 -1.8 1,721,981 + DORF12461 0.19 -0.1 1,722,186 - DORF12461 0.87 -0.8 1,722,205 - +0.7 1,722,249 - -0.4 1,722,250 + -0.5
Or see this region's nucleotide sequence