Strain Fitness in Sinorhizobium meliloti 1021 around SMc02556

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02558 and SMc02557 are separated by 114 nucleotidesSMc02557 and SMc02556 are separated by 15 nucleotidesSMc02556 and SMc02555 are separated by 158 nucleotidesSMc02555 and SMc02554 overlap by 4 nucleotides SMc02558: SMc02558 - hypothetical protein, at 1,204,581 to 1,205,423 SMc02558 SMc02557: SMc02557 - hypothetical protein, at 1,205,538 to 1,206,281 SMc02557 SMc02556: SMc02556 - hypothetical protein, at 1,206,297 to 1,206,566 SMc02556 SMc02555: SMc02555 - signal peptide protein, at 1,206,725 to 1,207,168 SMc02555 SMc02554: SMc02554 - hypothetical protein, at 1,207,165 to 1,207,629 SMc02554 Position (kb) 1206 1207Strain fitness (log2 ratio) -1 0 1 2 3at 1205.429 kb on + strandat 1205.429 kb on + strandat 1205.429 kb on + strandat 1205.430 kb on - strandat 1205.430 kb on - strandat 1205.442 kb on - strandat 1205.442 kb on - strandat 1205.462 kb on - strandat 1205.462 kb on - strandat 1206.579 kb on - strandat 1206.579 kb on - strandat 1206.651 kb on - strandat 1206.651 kb on - strandat 1206.671 kb on - strandat 1206.718 kb on + strandat 1206.719 kb on - strandat 1206.719 kb on - strandat 1206.727 kb on - strandat 1207.400 kb on - strand, within SMc02554at 1207.416 kb on - strand, within SMc02554at 1207.416 kb on - strand, within SMc02554at 1207.530 kb on - strand, within SMc02554at 1207.530 kb on - strand, within SMc02554at 1207.530 kb on - strand, within SMc02554at 1207.530 kb on - strand, within SMc02554

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,205,429 + +3.3
1,205,429 + +1.3
1,205,429 + +1.3
1,205,430 - -0.1
1,205,430 - +1.6
1,205,442 - -0.4
1,205,442 - -1.0
1,205,462 - +0.2
1,205,462 - -1.0
1,206,579 - -0.1
1,206,579 - -0.4
1,206,651 - -0.4
1,206,651 - +0.0
1,206,671 - +0.2
1,206,718 + +0.3
1,206,719 - -0.3
1,206,719 - -0.2
1,206,727 - +0.3
1,207,400 - SMc02554 0.51 -0.0
1,207,416 - SMc02554 0.54 -1.1
1,207,416 - SMc02554 0.54 -1.0
1,207,530 - SMc02554 0.78 +0.6
1,207,530 - SMc02554 0.78 -0.0
1,207,530 - SMc02554 0.78 -0.4
1,207,530 - SMc02554 0.78 -0.1

Or see this region's nucleotide sequence