Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02558 and SMc02557 are separated by 114 nucleotides SMc02557 and SMc02556 are separated by 15 nucleotides SMc02556 and SMc02555 are separated by 158 nucleotides SMc02555 and SMc02554 overlap by 4 nucleotides
SMc02558: SMc02558 - hypothetical protein, at 1,204,581 to 1,205,423
SMc02558
SMc02557: SMc02557 - hypothetical protein, at 1,205,538 to 1,206,281
SMc02557
SMc02556: SMc02556 - hypothetical protein, at 1,206,297 to 1,206,566
SMc02556
SMc02555: SMc02555 - signal peptide protein, at 1,206,725 to 1,207,168
SMc02555
SMc02554: SMc02554 - hypothetical protein, at 1,207,165 to 1,207,629
SMc02554
Position (kb)
1206
1207 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1205.429 kb on + strand at 1205.429 kb on + strand at 1205.429 kb on + strand at 1205.430 kb on - strand at 1205.430 kb on - strand at 1205.442 kb on - strand at 1205.442 kb on - strand at 1205.462 kb on - strand at 1205.462 kb on - strand at 1206.579 kb on - strand at 1206.579 kb on - strand at 1206.651 kb on - strand at 1206.651 kb on - strand at 1206.671 kb on - strand at 1206.718 kb on + strand at 1206.719 kb on - strand at 1206.719 kb on - strand at 1206.727 kb on - strand at 1207.400 kb on - strand, within SMc02554 at 1207.416 kb on - strand, within SMc02554 at 1207.416 kb on - strand, within SMc02554 at 1207.530 kb on - strand, within SMc02554 at 1207.530 kb on - strand, within SMc02554 at 1207.530 kb on - strand, within SMc02554 at 1207.530 kb on - strand, within SMc02554
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 1,205,429 + +3.3 1,205,429 + +1.3 1,205,429 + +1.3 1,205,430 - -0.1 1,205,430 - +1.6 1,205,442 - -0.4 1,205,442 - -1.0 1,205,462 - +0.2 1,205,462 - -1.0 1,206,579 - -0.1 1,206,579 - -0.4 1,206,651 - -0.4 1,206,651 - +0.0 1,206,671 - +0.2 1,206,718 + +0.3 1,206,719 - -0.3 1,206,719 - -0.2 1,206,727 - +0.3 1,207,400 - SMc02554 0.51 -0.0 1,207,416 - SMc02554 0.54 -1.1 1,207,416 - SMc02554 0.54 -1.0 1,207,530 - SMc02554 0.78 +0.6 1,207,530 - SMc02554 0.78 -0.0 1,207,530 - SMc02554 0.78 -0.4 1,207,530 - SMc02554 0.78 -0.1
Or see this region's nucleotide sequence