Strain Fitness in Sinorhizobium meliloti 1021 around SMc00738

Experiment: D-Xylose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00740 and SMc00739 overlap by 1 nucleotidesSMc00739 and SMc00759 are separated by 61 nucleotidesSMc00759 and SMc00738 are separated by 318 nucleotidesSMc00738 and SMc00737 are separated by 31 nucleotidesSMc00737 and SMc00736 are separated by 105 nucleotides SMc00740: SMc00740 - hypothetical protein, at 2,842,713 to 2,842,997 SMc00740 SMc00739: SMc00739 - hypothetical protein, at 2,842,997 to 2,843,479 SMc00739 SMc00759: SMc00759 - tRNA-Leu, at 2,843,541 to 2,843,625 SMc00759 SMc00738: SMc00738 - hypothetical protein, at 2,843,944 to 2,844,453 SMc00738 SMc00737: SMc00737 - hypothetical protein, at 2,844,485 to 2,845,042 SMc00737 SMc00736: SMc00736 - DNA-3-methyladenine DNA glycosylase, at 2,845,148 to 2,845,795 SMc00736 Position (kb) 2843 2844 2845Strain fitness (log2 ratio) -1 0 1 2 3at 2843.037 kb on + strandat 2843.126 kb on + strand, within SMc00739at 2843.126 kb on + strand, within SMc00739at 2843.126 kb on + strand, within SMc00739at 2843.126 kb on + strand, within SMc00739at 2843.126 kb on + strand, within SMc00739at 2843.126 kb on + strand, within SMc00739at 2843.127 kb on - strand, within SMc00739at 2843.127 kb on - strand, within SMc00739at 2843.132 kb on - strand, within SMc00739at 2843.162 kb on + strand, within SMc00739at 2843.163 kb on - strand, within SMc00739at 2843.163 kb on - strand, within SMc00739at 2843.264 kb on - strand, within SMc00739at 2843.770 kb on + strandat 2843.771 kb on - strandat 2843.850 kb on + strandat 2843.871 kb on + strandat 2843.871 kb on + strandat 2843.871 kb on + strandat 2844.451 kb on + strandat 2844.487 kb on - strandat 2844.516 kb on + strandat 2844.517 kb on - strandat 2844.566 kb on - strand, within SMc00737at 2844.594 kb on + strand, within SMc00737at 2844.595 kb on - strand, within SMc00737at 2844.597 kb on - strand, within SMc00737at 2844.756 kb on + strand, within SMc00737at 2844.756 kb on + strand, within SMc00737at 2844.829 kb on - strand, within SMc00737at 2844.829 kb on - strand, within SMc00737at 2844.829 kb on - strand, within SMc00737at 2844.829 kb on - strandat 2844.985 kb on + strand, within SMc00737at 2844.988 kb on - strandat 2845.079 kb on + strandat 2845.079 kb on + strandat 2845.081 kb on + strandat 2845.082 kb on - strandat 2845.084 kb on + strandat 2845.084 kb on + strandat 2845.085 kb on - strandat 2845.129 kb on - strandat 2845.129 kb on - strandat 2845.191 kb on + strandat 2845.191 kb on + strandat 2845.191 kb on + strandat 2845.191 kb on + strandat 2845.194 kb on + strandat 2845.195 kb on - strandat 2845.206 kb on - strandat 2845.368 kb on + strand, within SMc00736at 2845.368 kb on + strand, within SMc00736at 2845.369 kb on - strand, within SMc00736at 2845.369 kb on - strand, within SMc00736

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
remove
2,843,037 + +0.5
2,843,126 + SMc00739 0.27 +0.3
2,843,126 + SMc00739 0.27 -0.3
2,843,126 + SMc00739 0.27 +1.1
2,843,126 + SMc00739 0.27 +0.2
2,843,126 + SMc00739 0.27 +0.1
2,843,126 + SMc00739 0.27 -0.4
2,843,127 - SMc00739 0.27 +0.7
2,843,127 - SMc00739 0.27 +0.7
2,843,132 - SMc00739 0.28 -1.2
2,843,162 + SMc00739 0.34 +0.5
2,843,163 - SMc00739 0.34 -1.3
2,843,163 - SMc00739 0.34 +0.6
2,843,264 - SMc00739 0.55 -0.5
2,843,770 + +0.2
2,843,771 - -0.3
2,843,850 + -0.3
2,843,871 + -0.1
2,843,871 + -0.5
2,843,871 + +0.4
2,844,451 + +0.5
2,844,487 - -0.3
2,844,516 + +0.5
2,844,517 - +0.6
2,844,566 - SMc00737 0.15 +0.3
2,844,594 + SMc00737 0.20 +0.2
2,844,595 - SMc00737 0.20 +0.1
2,844,597 - SMc00737 0.20 +0.5
2,844,756 + SMc00737 0.49 -0.2
2,844,756 + SMc00737 0.49 -0.1
2,844,829 - SMc00737 0.62 -0.3
2,844,829 - SMc00737 0.62 -0.1
2,844,829 - SMc00737 0.62 +1.0
2,844,829 - +3.1
2,844,985 + SMc00737 0.90 +1.5
2,844,988 - +0.2
2,845,079 + -1.0
2,845,079 + -0.4
2,845,081 + -0.8
2,845,082 - +0.2
2,845,084 + +0.6
2,845,084 + -0.0
2,845,085 - -0.1
2,845,129 - +0.9
2,845,129 - +0.2
2,845,191 + -0.2
2,845,191 + -0.8
2,845,191 + -0.0
2,845,191 + -0.0
2,845,194 + +0.2
2,845,195 - -1.1
2,845,206 - -0.6
2,845,368 + SMc00736 0.34 +0.3
2,845,368 + SMc00736 0.34 +1.3
2,845,369 - SMc00736 0.34 -1.3
2,845,369 - SMc00736 0.34 +1.1

Or see this region's nucleotide sequence