Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1667 and SMa1668 are separated by 419 nucleotides SMa1668 and SMa1670 are separated by 15 nucleotides
SMa1667: SMa1667 - ArcD1 arginine/ornithine antiporter, at 933,295 to 934,722
SMa1667
SMa1668: SMa1668 - ArcD2 arginine/ornithine antiporter, at 935,142 to 936,563
SMa1668
SMa1670: SMa1670 - arginine deiminase, at 936,579 to 937,838
SMa1670
Position (kb) 935
936
937 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 934.253 kb on + strand, within SMa1667 at 934.253 kb on + strand, within SMa1667 at 934.402 kb on + strand, within SMa1667 at 934.403 kb on - strand, within SMa1667 at 934.403 kb on - strand, within SMa1667 at 934.410 kb on - strand, within SMa1667 at 934.454 kb on - strand, within SMa1667 at 934.514 kb on - strand, within SMa1667 at 934.524 kb on + strand, within SMa1667 at 934.524 kb on + strand, within SMa1667 at 934.574 kb on - strand, within SMa1667 at 934.574 kb on - strand, within SMa1667 at 934.659 kb on - strand at 934.690 kb on + strand at 934.691 kb on - strand at 934.716 kb on + strand at 934.717 kb on - strand at 934.718 kb on + strand at 934.719 kb on - strand at 934.720 kb on + strand at 934.720 kb on + strand at 934.721 kb on - strand at 935.010 kb on - strand at 935.010 kb on - strand at 935.292 kb on + strand, within SMa1668 at 935.292 kb on + strand, within SMa1668 at 935.293 kb on - strand, within SMa1668 at 935.293 kb on - strand, within SMa1668 at 935.361 kb on + strand, within SMa1668 at 935.399 kb on - strand, within SMa1668 at 935.445 kb on + strand, within SMa1668 at 935.445 kb on + strand, within SMa1668 at 935.445 kb on + strand, within SMa1668 at 935.446 kb on - strand, within SMa1668 at 935.446 kb on - strand, within SMa1668 at 935.790 kb on + strand, within SMa1668 at 935.849 kb on - strand, within SMa1668 at 936.057 kb on + strand, within SMa1668 at 936.058 kb on - strand, within SMa1668 at 936.058 kb on - strand, within SMa1668 at 936.133 kb on + strand, within SMa1668 at 936.241 kb on - strand, within SMa1668 at 936.241 kb on - strand, within SMa1668 at 936.241 kb on - strand, within SMa1668 at 936.241 kb on - strand, within SMa1668 at 936.292 kb on - strand, within SMa1668 at 936.292 kb on - strand, within SMa1668 at 936.351 kb on + strand, within SMa1668 at 936.351 kb on + strand, within SMa1668 at 936.411 kb on + strand, within SMa1668 at 936.412 kb on - strand, within SMa1668 at 936.412 kb on - strand, within SMa1668 at 936.549 kb on + strand at 936.588 kb on - strand at 936.617 kb on - strand at 936.637 kb on + strand at 936.876 kb on - strand, within SMa1670 at 936.876 kb on - strand, within SMa1670 at 936.898 kb on + strand, within SMa1670 at 936.899 kb on - strand, within SMa1670 at 937.044 kb on + strand, within SMa1670 at 937.045 kb on - strand, within SMa1670 at 937.045 kb on - strand, within SMa1670 at 937.074 kb on + strand, within SMa1670 at 937.075 kb on - strand, within SMa1670 at 937.076 kb on + strand, within SMa1670 at 937.129 kb on - strand, within SMa1670 at 937.174 kb on - strand, within SMa1670 at 937.420 kb on + strand, within SMa1670 at 937.421 kb on - strand, within SMa1670 at 937.421 kb on - strand, within SMa1670 at 937.460 kb on + strand, within SMa1670 at 937.461 kb on - strand, within SMa1670 at 937.461 kb on - strand, within SMa1670
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 934,253 + SMa1667 0.67 -0.2 934,253 + SMa1667 0.67 +2.1 934,402 + SMa1667 0.78 -0.1 934,403 - SMa1667 0.78 -0.6 934,403 - SMa1667 0.78 +0.2 934,410 - SMa1667 0.78 +0.7 934,454 - SMa1667 0.81 -0.7 934,514 - SMa1667 0.85 +0.1 934,524 + SMa1667 0.86 +0.2 934,524 + SMa1667 0.86 -0.2 934,574 - SMa1667 0.90 +0.1 934,574 - SMa1667 0.90 -1.6 934,659 - -0.5 934,690 + -2.4 934,691 - -1.3 934,716 + +0.3 934,717 - -0.3 934,718 + -0.2 934,719 - +0.3 934,720 + -0.1 934,720 + +0.1 934,721 - -1.6 935,010 - +0.3 935,010 - -0.9 935,292 + SMa1668 0.11 +1.0 935,292 + SMa1668 0.11 -0.6 935,293 - SMa1668 0.11 -1.8 935,293 - SMa1668 0.11 -0.4 935,361 + SMa1668 0.15 -0.3 935,399 - SMa1668 0.18 +0.3 935,445 + SMa1668 0.21 -0.1 935,445 + SMa1668 0.21 -0.2 935,445 + SMa1668 0.21 -0.2 935,446 - SMa1668 0.21 -0.4 935,446 - SMa1668 0.21 -0.4 935,790 + SMa1668 0.46 -0.8 935,849 - SMa1668 0.50 -0.4 936,057 + SMa1668 0.64 -0.0 936,058 - SMa1668 0.64 +0.4 936,058 - SMa1668 0.64 +3.0 936,133 + SMa1668 0.70 -1.4 936,241 - SMa1668 0.77 +0.9 936,241 - SMa1668 0.77 -3.0 936,241 - SMa1668 0.77 -0.4 936,241 - SMa1668 0.77 +0.2 936,292 - SMa1668 0.81 -1.9 936,292 - SMa1668 0.81 -0.5 936,351 + SMa1668 0.85 +0.6 936,351 + SMa1668 0.85 -0.1 936,411 + SMa1668 0.89 +1.6 936,412 - SMa1668 0.89 -1.0 936,412 - SMa1668 0.89 -0.2 936,549 + -1.2 936,588 - +0.6 936,617 - -0.1 936,637 + -0.2 936,876 - SMa1670 0.24 +0.5 936,876 - SMa1670 0.24 -1.4 936,898 + SMa1670 0.25 +0.6 936,899 - SMa1670 0.25 +0.1 937,044 + SMa1670 0.37 +0.2 937,045 - SMa1670 0.37 +0.1 937,045 - SMa1670 0.37 +0.2 937,074 + SMa1670 0.39 +0.2 937,075 - SMa1670 0.39 -0.6 937,076 + SMa1670 0.39 +0.1 937,129 - SMa1670 0.44 +0.1 937,174 - SMa1670 0.47 -0.5 937,420 + SMa1670 0.67 -0.8 937,421 - SMa1670 0.67 -1.2 937,421 - SMa1670 0.67 +0.7 937,460 + SMa1670 0.70 +0.5 937,461 - SMa1670 0.70 +0.3 937,461 - SMa1670 0.70 -0.8
Or see this region's nucleotide sequence