Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1593 and SMa1594 are separated by 29 nucleotides SMa1594 and SMa1595 are separated by 243 nucleotides SMa1595 and SMa1597 are separated by 449 nucleotides
SMa1593: SMa1593 - oxidoreductase, fragment, at 887,977 to 889,107
SMa1593
SMa1594: SMa1594 - hypothetical protein, at 889,137 to 889,790
SMa1594
SMa1595: SMa1595 - hypothetical protein, at 890,034 to 890,477
SMa1595
SMa1597: SMa1597 - Pilus assembly chaperone, at 890,927 to 891,709
SMa1597
Position (kb) 890
891 Strain fitness (log2 ratio) -2
-1
0
1
2 at 889.156 kb on - strand at 889.184 kb on - strand at 889.184 kb on - strand at 889.200 kb on + strand at 889.201 kb on - strand at 889.205 kb on + strand, within SMa1594 at 889.206 kb on - strand, within SMa1594 at 889.265 kb on + strand, within SMa1594 at 889.265 kb on + strand, within SMa1594 at 889.265 kb on + strand, within SMa1594 at 889.266 kb on - strand, within SMa1594 at 889.266 kb on - strand, within SMa1594 at 889.266 kb on - strand, within SMa1594 at 889.274 kb on - strand, within SMa1594 at 889.513 kb on + strand, within SMa1594 at 889.514 kb on - strand, within SMa1594 at 889.731 kb on + strand at 889.732 kb on - strand at 889.765 kb on - strand at 889.765 kb on - strand at 889.765 kb on - strand at 889.827 kb on - strand at 889.881 kb on + strand at 889.930 kb on - strand at 889.992 kb on + strand at 889.993 kb on - strand at 889.993 kb on - strand at 890.119 kb on + strand, within SMa1595 at 890.120 kb on - strand, within SMa1595 at 890.189 kb on - strand, within SMa1595 at 890.502 kb on - strand at 890.558 kb on - strand at 890.558 kb on - strand at 890.594 kb on + strand at 890.595 kb on - strand at 890.614 kb on + strand at 890.615 kb on - strand at 890.660 kb on - strand at 890.660 kb on - strand at 890.764 kb on - strand at 890.915 kb on + strand at 890.916 kb on - strand at 890.916 kb on - strand at 890.916 kb on - strand at 890.929 kb on - strand at 891.006 kb on + strand, within SMa1597 at 891.057 kb on + strand, within SMa1597 at 891.058 kb on - strand, within SMa1597 at 891.160 kb on + strand, within SMa1597
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 889,156 - +0.0 889,184 - -0.2 889,184 - +0.2 889,200 + -0.6 889,201 - +1.0 889,205 + SMa1594 0.10 +0.2 889,206 - SMa1594 0.11 -0.8 889,265 + SMa1594 0.20 -0.8 889,265 + SMa1594 0.20 +0.2 889,265 + SMa1594 0.20 +2.3 889,266 - SMa1594 0.20 +1.0 889,266 - SMa1594 0.20 -0.4 889,266 - SMa1594 0.20 -0.1 889,274 - SMa1594 0.21 -0.0 889,513 + SMa1594 0.57 +0.1 889,514 - SMa1594 0.58 +0.4 889,731 + -0.5 889,732 - -1.4 889,765 - +0.3 889,765 - -0.1 889,765 - +0.5 889,827 - -1.5 889,881 + -0.0 889,930 - +0.3 889,992 + -0.1 889,993 - -0.4 889,993 - -1.0 890,119 + SMa1595 0.19 -0.3 890,120 - SMa1595 0.19 -0.3 890,189 - SMa1595 0.35 -0.6 890,502 - +0.5 890,558 - -0.2 890,558 - -0.5 890,594 + -0.2 890,595 - +0.0 890,614 + -1.0 890,615 - +0.5 890,660 - -0.5 890,660 - -2.0 890,764 - +0.7 890,915 + -0.1 890,916 - +0.1 890,916 - +0.5 890,916 - +1.5 890,929 - +0.6 891,006 + SMa1597 0.10 +1.0 891,057 + SMa1597 0.17 +0.0 891,058 - SMa1597 0.17 +0.7 891,160 + SMa1597 0.30 +1.0
Or see this region's nucleotide sequence