Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21579

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21578 and SM_b21579 are separated by 59 nucleotidesSM_b21579 and SM_b21580 are separated by 46 nucleotidesSM_b21580 and SM_b21581 are separated by 264 nucleotides SM_b21578: SM_b21578 - copper-transporting P-type ATPase, at 1,116,959 to 1,119,442 _b21578 SM_b21579: SM_b21579 - MerR family transcriptional regulator, at 1,119,502 to 1,119,945 _b21579 SM_b21580: SM_b21580 - hypothetical protein, at 1,119,992 to 1,120,438 _b21580 SM_b21581: SM_b21581 - glycosyltransferase, at 1,120,703 to 1,121,794 _b21581 Position (kb) 1119 1120Strain fitness (log2 ratio) -2 -1 0 1at 1118.840 kb on + strand, within SM_b21578at 1119.291 kb on - strandat 1119.292 kb on + strandat 1119.292 kb on + strandat 1119.293 kb on - strandat 1119.559 kb on + strand, within SM_b21579at 1119.559 kb on + strand, within SM_b21579at 1119.559 kb on + strand, within SM_b21579at 1119.560 kb on - strand, within SM_b21579at 1119.577 kb on - strand, within SM_b21579at 1119.607 kb on + strand, within SM_b21579at 1119.637 kb on - strand, within SM_b21579at 1119.785 kb on + strand, within SM_b21579at 1119.944 kb on - strandat 1119.944 kb on - strandat 1119.984 kb on + strandat 1119.985 kb on - strandat 1119.985 kb on - strandat 1120.045 kb on - strandat 1120.120 kb on + strand, within SM_b21580at 1120.291 kb on + strand, within SM_b21580at 1120.292 kb on - strand, within SM_b21580at 1120.421 kb on + strandat 1120.422 kb on - strandat 1120.422 kb on - strandat 1120.425 kb on + strandat 1120.425 kb on + strandat 1120.425 kb on + strandat 1120.425 kb on + strandat 1120.426 kb on - strandat 1120.426 kb on - strandat 1120.467 kb on + strandat 1120.754 kb on + strandat 1120.755 kb on - strandat 1120.787 kb on - strandat 1120.800 kb on + strandat 1120.847 kb on - strand, within SM_b21581at 1120.847 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,118,840 + SM_b21578 0.76 +0.0
1,119,291 - -2.4
1,119,292 + +0.3
1,119,292 + +0.1
1,119,293 - -0.6
1,119,559 + SM_b21579 0.13 -0.1
1,119,559 + SM_b21579 0.13 -1.6
1,119,559 + SM_b21579 0.13 -0.6
1,119,560 - SM_b21579 0.13 -1.2
1,119,577 - SM_b21579 0.17 -0.3
1,119,607 + SM_b21579 0.24 +0.7
1,119,637 - SM_b21579 0.30 -0.3
1,119,785 + SM_b21579 0.64 -0.1
1,119,944 - -1.2
1,119,944 - -0.4
1,119,984 + -0.1
1,119,985 - -0.0
1,119,985 - +1.1
1,120,045 - +1.4
1,120,120 + SM_b21580 0.29 -1.3
1,120,291 + SM_b21580 0.67 -1.4
1,120,292 - SM_b21580 0.67 -1.2
1,120,421 + -1.2
1,120,422 - -0.1
1,120,422 - +0.1
1,120,425 + -0.9
1,120,425 + +0.1
1,120,425 + +0.2
1,120,425 + +0.2
1,120,426 - +1.0
1,120,426 - -0.2
1,120,467 + +0.2
1,120,754 + +0.1
1,120,755 - +0.8
1,120,787 - -1.6
1,120,800 + +0.0
1,120,847 - SM_b21581 0.13 +0.5
1,120,847 - -0.0

Or see this region's nucleotide sequence