Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20718

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20717 and SM_b20718 are separated by 266 nucleotidesSM_b20718 and SM_b20719 are separated by 77 nucleotides SM_b20717: SM_b20717 - LacI family transcriptional regulator, at 1,520,541 to 1,521,566 _b20717 SM_b20718: SM_b20718 - sugar uptake ABC transporter ATP-binding protein, at 1,521,833 to 1,523,359 _b20718 SM_b20719: SM_b20719 - sugar uptake ABC transporter permease, at 1,523,437 to 1,524,447 _b20719 Position (kb) 1521 1522 1523 1524Strain fitness (log2 ratio) -2 -1 0 1 2at 1520.922 kb on - strand, within SM_b20717at 1520.922 kb on - strand, within SM_b20717at 1520.922 kb on - strand, within SM_b20717at 1520.922 kb on - strand, within SM_b20717at 1520.922 kb on - strand, within SM_b20717at 1520.922 kb on - strand, within SM_b20717at 1520.981 kb on + strand, within SM_b20717at 1520.981 kb on + strand, within SM_b20717at 1520.983 kb on + strand, within SM_b20717at 1521.091 kb on + strand, within SM_b20717at 1521.091 kb on + strand, within SM_b20717at 1521.091 kb on + strand, within SM_b20717at 1521.091 kb on + strand, within SM_b20717at 1521.091 kb on + strand, within SM_b20717at 1521.092 kb on - strand, within SM_b20717at 1521.092 kb on - strand, within SM_b20717at 1521.092 kb on - strand, within SM_b20717at 1521.092 kb on - strand, within SM_b20717at 1521.092 kb on - strand, within SM_b20717at 1521.326 kb on + strand, within SM_b20717at 1521.326 kb on + strand, within SM_b20717at 1521.327 kb on - strand, within SM_b20717at 1521.418 kb on + strand, within SM_b20717at 1521.527 kb on + strandat 1521.528 kb on - strandat 1521.590 kb on - strandat 1521.686 kb on + strandat 1521.701 kb on + strandat 1521.701 kb on + strandat 1521.701 kb on + strandat 1522.202 kb on + strand, within SM_b20718at 1522.202 kb on + strand, within SM_b20718at 1522.202 kb on + strand, within SM_b20718at 1522.202 kb on + strand, within SM_b20718at 1522.202 kb on + strand, within SM_b20718at 1522.203 kb on - strand, within SM_b20718at 1522.203 kb on - strand, within SM_b20718at 1522.203 kb on - strand, within SM_b20718at 1522.203 kb on - strand, within SM_b20718at 1522.204 kb on + strand, within SM_b20718at 1522.204 kb on + strand, within SM_b20718at 1522.204 kb on + strand, within SM_b20718at 1522.205 kb on - strand, within SM_b20718at 1522.491 kb on + strand, within SM_b20718at 1522.659 kb on - strand, within SM_b20718at 1522.850 kb on + strand, within SM_b20718at 1522.901 kb on + strand, within SM_b20718at 1522.949 kb on + strand, within SM_b20718at 1523.159 kb on + strand, within SM_b20718at 1523.160 kb on - strand, within SM_b20718at 1523.160 kb on - strand, within SM_b20718at 1523.160 kb on - strand, within SM_b20718at 1523.879 kb on - strand, within SM_b20719at 1523.879 kb on - strand, within SM_b20719at 1523.939 kb on + strand, within SM_b20719at 1523.962 kb on + strand, within SM_b20719at 1523.963 kb on - strand, within SM_b20719at 1524.101 kb on - strand, within SM_b20719at 1524.181 kb on + strand, within SM_b20719at 1524.181 kb on + strand, within SM_b20719

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,520,922 - SM_b20717 0.37 +1.1
1,520,922 - SM_b20717 0.37 +0.3
1,520,922 - SM_b20717 0.37 +0.1
1,520,922 - SM_b20717 0.37 -0.7
1,520,922 - SM_b20717 0.37 -0.6
1,520,922 - SM_b20717 0.37 +0.6
1,520,981 + SM_b20717 0.43 +0.9
1,520,981 + SM_b20717 0.43 +0.2
1,520,983 + SM_b20717 0.43 +0.2
1,521,091 + SM_b20717 0.54 +1.0
1,521,091 + SM_b20717 0.54 +1.2
1,521,091 + SM_b20717 0.54 +0.7
1,521,091 + SM_b20717 0.54 +0.6
1,521,091 + SM_b20717 0.54 +0.0
1,521,092 - SM_b20717 0.54 +0.2
1,521,092 - SM_b20717 0.54 -0.1
1,521,092 - SM_b20717 0.54 +0.7
1,521,092 - SM_b20717 0.54 +0.4
1,521,092 - SM_b20717 0.54 +1.3
1,521,326 + SM_b20717 0.77 -0.9
1,521,326 + SM_b20717 0.77 -0.8
1,521,327 - SM_b20717 0.77 +0.0
1,521,418 + SM_b20717 0.85 +0.1
1,521,527 + +0.6
1,521,528 - +0.1
1,521,590 - -0.0
1,521,686 + +1.2
1,521,701 + +0.4
1,521,701 + +0.1
1,521,701 + +0.2
1,522,202 + SM_b20718 0.24 +1.3
1,522,202 + SM_b20718 0.24 +0.6
1,522,202 + SM_b20718 0.24 -0.1
1,522,202 + SM_b20718 0.24 -1.1
1,522,202 + SM_b20718 0.24 +0.5
1,522,203 - SM_b20718 0.24 -0.1
1,522,203 - SM_b20718 0.24 -1.8
1,522,203 - SM_b20718 0.24 -0.5
1,522,203 - SM_b20718 0.24 +0.4
1,522,204 + SM_b20718 0.24 -0.4
1,522,204 + SM_b20718 0.24 -0.1
1,522,204 + SM_b20718 0.24 +0.4
1,522,205 - SM_b20718 0.24 +0.2
1,522,491 + SM_b20718 0.43 +0.3
1,522,659 - SM_b20718 0.54 +1.1
1,522,850 + SM_b20718 0.67 +2.3
1,522,901 + SM_b20718 0.70 -0.1
1,522,949 + SM_b20718 0.73 -0.3
1,523,159 + SM_b20718 0.87 +1.9
1,523,160 - SM_b20718 0.87 -0.6
1,523,160 - SM_b20718 0.87 -1.5
1,523,160 - SM_b20718 0.87 +1.6
1,523,879 - SM_b20719 0.44 +0.2
1,523,879 - SM_b20719 0.44 +0.6
1,523,939 + SM_b20719 0.50 +0.5
1,523,962 + SM_b20719 0.52 -0.1
1,523,963 - SM_b20719 0.52 -0.4
1,524,101 - SM_b20719 0.66 -0.0
1,524,181 + SM_b20719 0.74 -0.6
1,524,181 + SM_b20719 0.74 -0.4

Or see this region's nucleotide sequence