Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20717 and SM_b20718 are separated by 266 nucleotides SM_b20718 and SM_b20719 are separated by 77 nucleotides
SM_b20717: SM_b20717 - LacI family transcriptional regulator, at 1,520,541 to 1,521,566
_b20717
SM_b20718: SM_b20718 - sugar uptake ABC transporter ATP-binding protein, at 1,521,833 to 1,523,359
_b20718
SM_b20719: SM_b20719 - sugar uptake ABC transporter permease, at 1,523,437 to 1,524,447
_b20719
Position (kb)
1521
1522
1523
1524 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.922 kb on - strand, within SM_b20717 at 1520.981 kb on + strand, within SM_b20717 at 1520.981 kb on + strand, within SM_b20717 at 1520.983 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.091 kb on + strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.092 kb on - strand, within SM_b20717 at 1521.326 kb on + strand, within SM_b20717 at 1521.326 kb on + strand, within SM_b20717 at 1521.327 kb on - strand, within SM_b20717 at 1521.418 kb on + strand, within SM_b20717 at 1521.527 kb on + strand at 1521.528 kb on - strand at 1521.590 kb on - strand at 1521.686 kb on + strand at 1521.701 kb on + strand at 1521.701 kb on + strand at 1521.701 kb on + strand at 1522.202 kb on + strand, within SM_b20718 at 1522.202 kb on + strand, within SM_b20718 at 1522.202 kb on + strand, within SM_b20718 at 1522.202 kb on + strand, within SM_b20718 at 1522.202 kb on + strand, within SM_b20718 at 1522.203 kb on - strand, within SM_b20718 at 1522.203 kb on - strand, within SM_b20718 at 1522.203 kb on - strand, within SM_b20718 at 1522.203 kb on - strand, within SM_b20718 at 1522.204 kb on + strand, within SM_b20718 at 1522.204 kb on + strand, within SM_b20718 at 1522.204 kb on + strand, within SM_b20718 at 1522.205 kb on - strand, within SM_b20718 at 1522.491 kb on + strand, within SM_b20718 at 1522.659 kb on - strand, within SM_b20718 at 1522.850 kb on + strand, within SM_b20718 at 1522.901 kb on + strand, within SM_b20718 at 1522.949 kb on + strand, within SM_b20718 at 1523.159 kb on + strand, within SM_b20718 at 1523.160 kb on - strand, within SM_b20718 at 1523.160 kb on - strand, within SM_b20718 at 1523.160 kb on - strand, within SM_b20718 at 1523.879 kb on - strand, within SM_b20719 at 1523.879 kb on - strand, within SM_b20719 at 1523.939 kb on + strand, within SM_b20719 at 1523.962 kb on + strand, within SM_b20719 at 1523.963 kb on - strand, within SM_b20719 at 1524.101 kb on - strand, within SM_b20719 at 1524.181 kb on + strand, within SM_b20719 at 1524.181 kb on + strand, within SM_b20719
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 1,520,922 - SM_b20717 0.37 +1.1 1,520,922 - SM_b20717 0.37 +0.3 1,520,922 - SM_b20717 0.37 +0.1 1,520,922 - SM_b20717 0.37 -0.7 1,520,922 - SM_b20717 0.37 -0.6 1,520,922 - SM_b20717 0.37 +0.6 1,520,981 + SM_b20717 0.43 +0.9 1,520,981 + SM_b20717 0.43 +0.2 1,520,983 + SM_b20717 0.43 +0.2 1,521,091 + SM_b20717 0.54 +1.0 1,521,091 + SM_b20717 0.54 +1.2 1,521,091 + SM_b20717 0.54 +0.7 1,521,091 + SM_b20717 0.54 +0.6 1,521,091 + SM_b20717 0.54 +0.0 1,521,092 - SM_b20717 0.54 +0.2 1,521,092 - SM_b20717 0.54 -0.1 1,521,092 - SM_b20717 0.54 +0.7 1,521,092 - SM_b20717 0.54 +0.4 1,521,092 - SM_b20717 0.54 +1.3 1,521,326 + SM_b20717 0.77 -0.9 1,521,326 + SM_b20717 0.77 -0.8 1,521,327 - SM_b20717 0.77 +0.0 1,521,418 + SM_b20717 0.85 +0.1 1,521,527 + +0.6 1,521,528 - +0.1 1,521,590 - -0.0 1,521,686 + +1.2 1,521,701 + +0.4 1,521,701 + +0.1 1,521,701 + +0.2 1,522,202 + SM_b20718 0.24 +1.3 1,522,202 + SM_b20718 0.24 +0.6 1,522,202 + SM_b20718 0.24 -0.1 1,522,202 + SM_b20718 0.24 -1.1 1,522,202 + SM_b20718 0.24 +0.5 1,522,203 - SM_b20718 0.24 -0.1 1,522,203 - SM_b20718 0.24 -1.8 1,522,203 - SM_b20718 0.24 -0.5 1,522,203 - SM_b20718 0.24 +0.4 1,522,204 + SM_b20718 0.24 -0.4 1,522,204 + SM_b20718 0.24 -0.1 1,522,204 + SM_b20718 0.24 +0.4 1,522,205 - SM_b20718 0.24 +0.2 1,522,491 + SM_b20718 0.43 +0.3 1,522,659 - SM_b20718 0.54 +1.1 1,522,850 + SM_b20718 0.67 +2.3 1,522,901 + SM_b20718 0.70 -0.1 1,522,949 + SM_b20718 0.73 -0.3 1,523,159 + SM_b20718 0.87 +1.9 1,523,160 - SM_b20718 0.87 -0.6 1,523,160 - SM_b20718 0.87 -1.5 1,523,160 - SM_b20718 0.87 +1.6 1,523,879 - SM_b20719 0.44 +0.2 1,523,879 - SM_b20719 0.44 +0.6 1,523,939 + SM_b20719 0.50 +0.5 1,523,962 + SM_b20719 0.52 -0.1 1,523,963 - SM_b20719 0.52 -0.4 1,524,101 - SM_b20719 0.66 -0.0 1,524,181 + SM_b20719 0.74 -0.6 1,524,181 + SM_b20719 0.74 -0.4
Or see this region's nucleotide sequence