Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20661 and SM_b20662 are separated by 84 nucleotides SM_b20662 and SM_b20663 are separated by 1 nucleotides
SM_b20661: SM_b20661 - sugar uptake ABC transporter ATP-binding protein, at 1,462,371 to 1,463,438
_b20661
SM_b20662: SM_b20662 - oxidoreductase, at 1,463,523 to 1,464,299
_b20662
SM_b20663: SM_b20663 - hypothetical protein, at 1,464,301 to 1,465,284
_b20663
Position (kb)
1463
1464
1465 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1462.588 kb on + strand, within SM_b20661 at 1462.588 kb on + strand, within SM_b20661 at 1462.588 kb on + strand, within SM_b20661 at 1462.588 kb on + strand, within SM_b20661 at 1462.607 kb on - strand, within SM_b20661 at 1462.737 kb on + strand, within SM_b20661 at 1462.874 kb on - strand, within SM_b20661 at 1463.171 kb on + strand, within SM_b20661 at 1463.179 kb on + strand, within SM_b20661 at 1463.606 kb on - strand, within SM_b20662 at 1463.606 kb on - strand, within SM_b20662 at 1463.606 kb on - strand, within SM_b20662 at 1463.606 kb on - strand, within SM_b20662 at 1463.813 kb on - strand, within SM_b20662 at 1463.813 kb on - strand, within SM_b20662 at 1463.813 kb on - strand, within SM_b20662 at 1464.196 kb on + strand, within SM_b20662 at 1464.197 kb on - strand, within SM_b20662 at 1464.466 kb on + strand, within SM_b20663 at 1464.658 kb on - strand, within SM_b20663 at 1464.833 kb on + strand, within SM_b20663 at 1464.833 kb on + strand, within SM_b20663 at 1464.834 kb on - strand, within SM_b20663 at 1464.904 kb on - strand, within SM_b20663 at 1464.904 kb on - strand, within SM_b20663 at 1464.904 kb on - strand, within SM_b20663 at 1464.904 kb on - strand, within SM_b20663 at 1465.001 kb on + strand, within SM_b20663 at 1465.002 kb on - strand at 1465.268 kb on - strand at 1465.268 kb on - strand at 1465.268 kb on - strand at 1465.268 kb on - strand at 1465.276 kb on + strand at 1465.277 kb on - strand at 1465.277 kb on - strand at 1465.277 kb on - strand at 1465.277 kb on - strand at 1465.277 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 1,462,588 + SM_b20661 0.20 -0.7 1,462,588 + SM_b20661 0.20 +0.7 1,462,588 + SM_b20661 0.20 -2.1 1,462,588 + SM_b20661 0.20 +0.2 1,462,607 - SM_b20661 0.22 +0.2 1,462,737 + SM_b20661 0.34 +0.6 1,462,874 - SM_b20661 0.47 -0.6 1,463,171 + SM_b20661 0.75 +0.4 1,463,179 + SM_b20661 0.76 -0.2 1,463,606 - SM_b20662 0.11 +0.1 1,463,606 - SM_b20662 0.11 +0.8 1,463,606 - SM_b20662 0.11 -0.8 1,463,606 - SM_b20662 0.11 -1.3 1,463,813 - SM_b20662 0.37 +0.1 1,463,813 - SM_b20662 0.37 -0.3 1,463,813 - SM_b20662 0.37 +0.1 1,464,196 + SM_b20662 0.87 +0.3 1,464,197 - SM_b20662 0.87 -0.3 1,464,466 + SM_b20663 0.17 -4.2 1,464,658 - SM_b20663 0.36 -0.2 1,464,833 + SM_b20663 0.54 -0.0 1,464,833 + SM_b20663 0.54 +0.1 1,464,834 - SM_b20663 0.54 -0.1 1,464,904 - SM_b20663 0.61 +0.0 1,464,904 - SM_b20663 0.61 -0.3 1,464,904 - SM_b20663 0.61 +0.9 1,464,904 - SM_b20663 0.61 -2.5 1,465,001 + SM_b20663 0.71 -0.1 1,465,002 - -2.0 1,465,268 - +0.4 1,465,268 - -0.6 1,465,268 - -1.3 1,465,268 - +0.6 1,465,276 + -0.4 1,465,277 - -0.7 1,465,277 - +0.0 1,465,277 - -0.2 1,465,277 - -0.5 1,465,277 - +0.6
Or see this region's nucleotide sequence