Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20662

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20661 and SM_b20662 are separated by 84 nucleotidesSM_b20662 and SM_b20663 are separated by 1 nucleotides SM_b20661: SM_b20661 - sugar uptake ABC transporter ATP-binding protein, at 1,462,371 to 1,463,438 _b20661 SM_b20662: SM_b20662 - oxidoreductase, at 1,463,523 to 1,464,299 _b20662 SM_b20663: SM_b20663 - hypothetical protein, at 1,464,301 to 1,465,284 _b20663 Position (kb) 1463 1464 1465Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1462.588 kb on + strand, within SM_b20661at 1462.588 kb on + strand, within SM_b20661at 1462.588 kb on + strand, within SM_b20661at 1462.588 kb on + strand, within SM_b20661at 1462.607 kb on - strand, within SM_b20661at 1462.737 kb on + strand, within SM_b20661at 1462.874 kb on - strand, within SM_b20661at 1463.171 kb on + strand, within SM_b20661at 1463.179 kb on + strand, within SM_b20661at 1463.606 kb on - strand, within SM_b20662at 1463.606 kb on - strand, within SM_b20662at 1463.606 kb on - strand, within SM_b20662at 1463.606 kb on - strand, within SM_b20662at 1463.813 kb on - strand, within SM_b20662at 1463.813 kb on - strand, within SM_b20662at 1463.813 kb on - strand, within SM_b20662at 1464.196 kb on + strand, within SM_b20662at 1464.197 kb on - strand, within SM_b20662at 1464.466 kb on + strand, within SM_b20663at 1464.658 kb on - strand, within SM_b20663at 1464.833 kb on + strand, within SM_b20663at 1464.833 kb on + strand, within SM_b20663at 1464.834 kb on - strand, within SM_b20663at 1464.904 kb on - strand, within SM_b20663at 1464.904 kb on - strand, within SM_b20663at 1464.904 kb on - strand, within SM_b20663at 1464.904 kb on - strand, within SM_b20663at 1465.001 kb on + strand, within SM_b20663at 1465.002 kb on - strandat 1465.268 kb on - strandat 1465.268 kb on - strandat 1465.268 kb on - strandat 1465.268 kb on - strandat 1465.276 kb on + strandat 1465.277 kb on - strandat 1465.277 kb on - strandat 1465.277 kb on - strandat 1465.277 kb on - strandat 1465.277 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,462,588 + SM_b20661 0.20 -0.7
1,462,588 + SM_b20661 0.20 +0.7
1,462,588 + SM_b20661 0.20 -2.1
1,462,588 + SM_b20661 0.20 +0.2
1,462,607 - SM_b20661 0.22 +0.2
1,462,737 + SM_b20661 0.34 +0.6
1,462,874 - SM_b20661 0.47 -0.6
1,463,171 + SM_b20661 0.75 +0.4
1,463,179 + SM_b20661 0.76 -0.2
1,463,606 - SM_b20662 0.11 +0.1
1,463,606 - SM_b20662 0.11 +0.8
1,463,606 - SM_b20662 0.11 -0.8
1,463,606 - SM_b20662 0.11 -1.3
1,463,813 - SM_b20662 0.37 +0.1
1,463,813 - SM_b20662 0.37 -0.3
1,463,813 - SM_b20662 0.37 +0.1
1,464,196 + SM_b20662 0.87 +0.3
1,464,197 - SM_b20662 0.87 -0.3
1,464,466 + SM_b20663 0.17 -4.2
1,464,658 - SM_b20663 0.36 -0.2
1,464,833 + SM_b20663 0.54 -0.0
1,464,833 + SM_b20663 0.54 +0.1
1,464,834 - SM_b20663 0.54 -0.1
1,464,904 - SM_b20663 0.61 +0.0
1,464,904 - SM_b20663 0.61 -0.3
1,464,904 - SM_b20663 0.61 +0.9
1,464,904 - SM_b20663 0.61 -2.5
1,465,001 + SM_b20663 0.71 -0.1
1,465,002 - -2.0
1,465,268 - +0.4
1,465,268 - -0.6
1,465,268 - -1.3
1,465,268 - +0.6
1,465,276 + -0.4
1,465,277 - -0.7
1,465,277 - +0.0
1,465,277 - -0.2
1,465,277 - -0.5
1,465,277 - +0.6

Or see this region's nucleotide sequence