Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20068

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20066 and SM_b20067 are separated by 3 nucleotidesSM_b20067 and SM_b20068 are separated by 214 nucleotidesSM_b20068 and SM_b20069 are separated by 533 nucleotides SM_b20066: SM_b20066 - hypothetical protein, at 74,537 to 74,722 _b20066 SM_b20067: SM_b20067 - hypothetical protein, at 74,726 to 75,247 _b20067 SM_b20068: SM_b20068 - hypothetical protein, at 75,462 to 75,671 _b20068 SM_b20069: SM_b20069 - amino acid carrier protein, at 76,205 to 77,608 _b20069 Position (kb) 75 76Strain fitness (log2 ratio) -1 0 1at 74.611 kb on - strandat 74.832 kb on + strand, within SM_b20067at 74.833 kb on - strand, within SM_b20067at 74.833 kb on - strand, within SM_b20067at 74.930 kb on - strand, within SM_b20067at 75.088 kb on + strand, within SM_b20067at 75.089 kb on - strand, within SM_b20067at 75.119 kb on + strand, within SM_b20067at 75.134 kb on - strand, within SM_b20067at 75.134 kb on - strand, within SM_b20067at 75.371 kb on + strandat 75.808 kb on + strandat 75.838 kb on + strandat 75.839 kb on - strandat 75.839 kb on - strandat 75.839 kb on - strandat 75.839 kb on - strandat 75.839 kb on - strandat 75.839 kb on - strandat 75.839 kb on - strandat 75.924 kb on + strandat 75.924 kb on + strandat 75.940 kb on - strandat 75.964 kb on + strandat 75.964 kb on + strandat 75.964 kb on + strandat 75.964 kb on + strandat 75.964 kb on + strandat 75.964 kb on + strandat 75.964 kb on + strandat 75.965 kb on - strandat 75.965 kb on - strandat 75.965 kb on - strandat 75.965 kb on - strandat 75.968 kb on + strandat 75.968 kb on + strandat 75.968 kb on + strandat 75.968 kb on + strandat 75.968 kb on + strandat 75.969 kb on - strandat 75.969 kb on - strandat 75.998 kb on + strandat 75.998 kb on + strandat 75.999 kb on - strandat 75.999 kb on - strandat 75.999 kb on - strandat 76.228 kb on + strandat 76.228 kb on + strandat 76.338 kb on - strandat 76.338 kb on - strandat 76.338 kb on - strandat 76.397 kb on - strand, within SM_b20069at 76.472 kb on - strand, within SM_b20069at 76.558 kb on - strand, within SM_b20069at 76.610 kb on - strand, within SM_b20069

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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74,611 - +1.2
74,832 + SM_b20067 0.20 +0.0
74,833 - SM_b20067 0.20 +0.2
74,833 - SM_b20067 0.20 -1.0
74,930 - SM_b20067 0.39 +0.1
75,088 + SM_b20067 0.69 -1.2
75,089 - SM_b20067 0.70 +0.0
75,119 + SM_b20067 0.75 +0.1
75,134 - SM_b20067 0.78 -0.1
75,134 - SM_b20067 0.78 -0.1
75,371 + -0.2
75,808 + -0.1
75,838 + +1.3
75,839 - +0.2
75,839 - -0.8
75,839 - +1.2
75,839 - -0.4
75,839 - +0.5
75,839 - -1.3
75,839 - -0.7
75,924 + -0.3
75,924 + -1.2
75,940 - -0.1
75,964 + -0.1
75,964 + +1.3
75,964 + -0.4
75,964 + +0.0
75,964 + -1.3
75,964 + +0.1
75,964 + -0.1
75,965 - +0.2
75,965 - +1.2
75,965 - -0.2
75,965 - +0.2
75,968 + +1.3
75,968 + +0.8
75,968 + -0.1
75,968 + -0.2
75,968 + +0.3
75,969 - +0.8
75,969 - -1.5
75,998 + -0.7
75,998 + -0.5
75,999 - +0.5
75,999 - -0.9
75,999 - +0.1
76,228 + +0.2
76,228 + -0.4
76,338 - -0.2
76,338 - +0.2
76,338 - -0.5
76,397 - SM_b20069 0.14 -0.3
76,472 - SM_b20069 0.19 +0.2
76,558 - SM_b20069 0.25 +0.5
76,610 - SM_b20069 0.29 +0.8

Or see this region's nucleotide sequence