Experiment: KB with Biochanin a diacetate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4696 and Psyr_4697 are separated by 192 nucleotides Psyr_4697 and Psyr_4698 are separated by 530 nucleotides
Psyr_4696: Psyr_4696 - transcriptional regulator, LacI family, at 5,564,427 to 5,565,446
_4696
Psyr_4697: Psyr_4697 - Aminoglycoside phosphotransferase, at 5,565,639 to 5,566,613
_4697
Psyr_4698: Psyr_4698 - RarD protein, at 5,567,144 to 5,568,031
_4698
Position (kb) 5565
5566
5567 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5564.751 kb on + strand, within Psyr_4696 at 5564.751 kb on + strand, within Psyr_4696 at 5564.751 kb on + strand, within Psyr_4696 at 5564.786 kb on + strand, within Psyr_4696 at 5564.786 kb on + strand, within Psyr_4696 at 5564.787 kb on - strand, within Psyr_4696 at 5564.787 kb on - strand, within Psyr_4696 at 5564.787 kb on - strand, within Psyr_4696 at 5564.858 kb on - strand, within Psyr_4696 at 5565.151 kb on + strand, within Psyr_4696 at 5565.152 kb on - strand, within Psyr_4696 at 5565.152 kb on - strand, within Psyr_4696 at 5565.176 kb on + strand, within Psyr_4696 at 5565.178 kb on + strand, within Psyr_4696 at 5565.366 kb on + strand at 5565.366 kb on + strand at 5565.366 kb on + strand at 5565.366 kb on + strand at 5565.367 kb on - strand at 5565.367 kb on - strand at 5565.485 kb on + strand at 5565.486 kb on - strand at 5565.555 kb on + strand at 5565.593 kb on + strand at 5565.593 kb on + strand at 5565.634 kb on + strand at 5565.635 kb on - strand at 5565.635 kb on - strand at 5565.662 kb on + strand at 5565.662 kb on + strand at 5565.662 kb on + strand at 5565.662 kb on + strand at 5565.662 kb on + strand at 5565.662 kb on + strand at 5565.663 kb on - strand at 5565.663 kb on - strand at 5565.663 kb on - strand at 5565.663 kb on - strand at 5565.753 kb on + strand, within Psyr_4697 at 5565.754 kb on - strand, within Psyr_4697 at 5566.013 kb on - strand, within Psyr_4697 at 5566.323 kb on - strand, within Psyr_4697 at 5566.390 kb on - strand, within Psyr_4697 at 5566.464 kb on + strand, within Psyr_4697 at 5566.465 kb on - strand, within Psyr_4697 at 5566.465 kb on - strand, within Psyr_4697 at 5566.465 kb on - strand, within Psyr_4697 at 5566.774 kb on + strand at 5566.783 kb on - strand at 5566.786 kb on + strand at 5566.786 kb on + strand at 5566.786 kb on + strand at 5566.787 kb on - strand at 5566.787 kb on - strand at 5566.787 kb on - strand at 5566.787 kb on - strand at 5566.787 kb on - strand at 5566.787 kb on - strand at 5566.833 kb on + strand at 5566.834 kb on - strand at 5566.838 kb on - strand at 5566.838 kb on - strand at 5566.976 kb on + strand at 5567.049 kb on + strand at 5567.049 kb on + strand at 5567.049 kb on + strand at 5567.049 kb on + strand at 5567.049 kb on + strand at 5567.050 kb on - strand at 5567.050 kb on - strand at 5567.050 kb on - strand at 5567.050 kb on - strand at 5567.050 kb on - strand at 5567.050 kb on - strand at 5567.051 kb on + strand at 5567.051 kb on + strand at 5567.051 kb on + strand at 5567.052 kb on - strand at 5567.052 kb on - strand at 5567.076 kb on - strand at 5567.109 kb on + strand at 5567.110 kb on - strand at 5567.110 kb on - strand at 5567.110 kb on - strand at 5567.128 kb on - strand at 5567.130 kb on + strand at 5567.131 kb on - strand at 5567.131 kb on - strand at 5567.171 kb on + strand at 5567.171 kb on + strand at 5567.172 kb on - strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.192 kb on + strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.193 kb on - strand at 5567.219 kb on + strand at 5567.219 kb on + strand at 5567.219 kb on + strand at 5567.219 kb on + strand at 5567.220 kb on - strand at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.411 kb on + strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.412 kb on - strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.462 kb on + strand, within Psyr_4698 at 5567.463 kb on - strand, within Psyr_4698 at 5567.463 kb on - strand, within Psyr_4698 at 5567.463 kb on - strand, within Psyr_4698 at 5567.463 kb on - strand, within Psyr_4698 at 5567.463 kb on - strand, within Psyr_4698 at 5567.463 kb on - strand, within Psyr_4698 at 5567.463 kb on - strand, within Psyr_4698 at 5567.503 kb on - strand, within Psyr_4698 at 5567.503 kb on - strand, within Psyr_4698
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Biochanin a diacetate 10 mM remove 5,564,751 + Psyr_4696 0.32 +2.1 5,564,751 + Psyr_4696 0.32 -0.8 5,564,751 + Psyr_4696 0.32 +0.3 5,564,786 + Psyr_4696 0.35 -1.0 5,564,786 + Psyr_4696 0.35 +1.3 5,564,787 - Psyr_4696 0.35 +0.1 5,564,787 - Psyr_4696 0.35 -0.3 5,564,787 - Psyr_4696 0.35 -0.1 5,564,858 - Psyr_4696 0.42 +0.3 5,565,151 + Psyr_4696 0.71 +0.8 5,565,152 - Psyr_4696 0.71 +0.8 5,565,152 - Psyr_4696 0.71 +0.6 5,565,176 + Psyr_4696 0.73 -0.1 5,565,178 + Psyr_4696 0.74 -1.4 5,565,366 + -0.7 5,565,366 + -0.5 5,565,366 + -0.7 5,565,366 + -0.4 5,565,367 - +0.6 5,565,367 - -0.1 5,565,485 + -0.1 5,565,486 - +0.5 5,565,555 + +0.7 5,565,593 + +1.3 5,565,593 + -0.0 5,565,634 + +1.3 5,565,635 - -1.1 5,565,635 - -1.8 5,565,662 + -0.3 5,565,662 + -0.6 5,565,662 + -1.9 5,565,662 + +0.1 5,565,662 + +0.9 5,565,662 + -0.7 5,565,663 - +0.5 5,565,663 - -1.4 5,565,663 - -0.3 5,565,663 - -0.9 5,565,753 + Psyr_4697 0.12 +1.1 5,565,754 - Psyr_4697 0.12 -1.9 5,566,013 - Psyr_4697 0.38 -0.9 5,566,323 - Psyr_4697 0.70 -0.4 5,566,390 - Psyr_4697 0.77 -1.1 5,566,464 + Psyr_4697 0.85 -2.1 5,566,465 - Psyr_4697 0.85 -0.1 5,566,465 - Psyr_4697 0.85 -0.9 5,566,465 - Psyr_4697 0.85 +0.4 5,566,774 + -0.0 5,566,783 - +0.2 5,566,786 + +1.3 5,566,786 + +1.3 5,566,786 + -1.9 5,566,787 - -2.1 5,566,787 - +1.6 5,566,787 - -0.0 5,566,787 - -1.6 5,566,787 - +0.2 5,566,787 - -0.3 5,566,833 + +0.2 5,566,834 - -0.5 5,566,838 - -1.6 5,566,838 - +1.1 5,566,976 + -1.6 5,567,049 + +0.6 5,567,049 + +1.5 5,567,049 + +1.9 5,567,049 + -1.5 5,567,049 + -0.3 5,567,050 - +0.3 5,567,050 - -0.5 5,567,050 - -0.5 5,567,050 - +1.3 5,567,050 - -0.4 5,567,050 - -1.0 5,567,051 + -0.0 5,567,051 + -1.1 5,567,051 + +1.6 5,567,052 - -1.5 5,567,052 - -0.7 5,567,076 - -0.3 5,567,109 + -0.3 5,567,110 - -0.7 5,567,110 - -0.1 5,567,110 - -0.1 5,567,128 - -1.5 5,567,130 + -0.9 5,567,131 - -0.3 5,567,131 - +0.6 5,567,171 + +0.5 5,567,171 + +0.1 5,567,172 - +0.4 5,567,192 + +0.2 5,567,192 + -1.4 5,567,192 + -0.1 5,567,192 + -1.5 5,567,192 + +1.7 5,567,192 + -0.1 5,567,192 + +2.5 5,567,192 + -0.3 5,567,192 + +0.8 5,567,192 + -0.7 5,567,192 + -1.2 5,567,192 + -0.4 5,567,192 + -0.8 5,567,193 - -0.5 5,567,193 - +0.3 5,567,193 - -1.2 5,567,193 - +1.6 5,567,193 - +0.3 5,567,193 - +0.1 5,567,193 - -0.5 5,567,193 - -0.7 5,567,193 - +0.3 5,567,193 - +0.9 5,567,219 + -0.6 5,567,219 + -0.0 5,567,219 + +0.7 5,567,219 + +0.2 5,567,220 - -0.4 5,567,411 + Psyr_4698 0.30 +1.5 5,567,411 + Psyr_4698 0.30 +0.8 5,567,411 + Psyr_4698 0.30 -0.5 5,567,411 + Psyr_4698 0.30 +0.9 5,567,411 + Psyr_4698 0.30 +2.3 5,567,411 + Psyr_4698 0.30 -1.0 5,567,411 + Psyr_4698 0.30 -0.5 5,567,411 + Psyr_4698 0.30 -0.7 5,567,411 + Psyr_4698 0.30 -1.4 5,567,411 + Psyr_4698 0.30 -0.6 5,567,412 - Psyr_4698 0.30 -0.1 5,567,412 - Psyr_4698 0.30 -1.5 5,567,412 - Psyr_4698 0.30 +1.1 5,567,412 - Psyr_4698 0.30 -1.1 5,567,412 - Psyr_4698 0.30 -0.3 5,567,412 - Psyr_4698 0.30 -0.4 5,567,412 - Psyr_4698 0.30 -1.1 5,567,412 - Psyr_4698 0.30 -2.9 5,567,412 - Psyr_4698 0.30 +0.4 5,567,412 - Psyr_4698 0.30 -1.9 5,567,462 + Psyr_4698 0.36 +2.3 5,567,462 + Psyr_4698 0.36 -0.6 5,567,462 + Psyr_4698 0.36 +0.0 5,567,462 + Psyr_4698 0.36 +0.5 5,567,462 + Psyr_4698 0.36 -1.4 5,567,462 + Psyr_4698 0.36 -2.5 5,567,462 + Psyr_4698 0.36 -0.0 5,567,462 + Psyr_4698 0.36 +1.2 5,567,462 + Psyr_4698 0.36 -2.2 5,567,462 + Psyr_4698 0.36 +0.1 5,567,462 + Psyr_4698 0.36 -0.5 5,567,462 + Psyr_4698 0.36 +0.8 5,567,463 - Psyr_4698 0.36 -0.8 5,567,463 - Psyr_4698 0.36 +0.7 5,567,463 - Psyr_4698 0.36 +0.1 5,567,463 - Psyr_4698 0.36 -0.4 5,567,463 - Psyr_4698 0.36 -0.7 5,567,463 - Psyr_4698 0.36 -0.3 5,567,463 - Psyr_4698 0.36 -2.4 5,567,503 - Psyr_4698 0.40 -1.4 5,567,503 - Psyr_4698 0.40 +0.2
Or see this region's nucleotide sequence