Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3322

Experiment: KB with Biochanin a diacetate 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3321 and Psyr_3322 are separated by 68 nucleotidesPsyr_3322 and Psyr_3323 are separated by 113 nucleotides Psyr_3321: Psyr_3321 - transcriptional regulator, LysR family, at 3,972,243 to 3,973,178 _3321 Psyr_3322: Psyr_3322 - Major facilitator superfamily, at 3,973,247 to 3,974,473 _3322 Psyr_3323: Psyr_3323 - conserved hypothetical protein, at 3,974,587 to 3,975,678 _3323 Position (kb) 3973 3974 3975Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3972.472 kb on + strand, within Psyr_3321at 3972.846 kb on + strand, within Psyr_3321at 3972.851 kb on - strand, within Psyr_3321at 3973.051 kb on + strand, within Psyr_3321at 3973.051 kb on + strand, within Psyr_3321at 3973.052 kb on - strand, within Psyr_3321at 3973.115 kb on - strandat 3973.115 kb on - strandat 3973.166 kb on + strandat 3973.166 kb on + strandat 3973.167 kb on - strandat 3973.232 kb on - strandat 3973.308 kb on + strandat 3973.309 kb on - strandat 3973.628 kb on + strand, within Psyr_3322at 3973.629 kb on - strand, within Psyr_3322at 3973.770 kb on + strand, within Psyr_3322at 3973.771 kb on - strand, within Psyr_3322at 3973.801 kb on + strand, within Psyr_3322at 3973.802 kb on - strand, within Psyr_3322at 3973.802 kb on - strand, within Psyr_3322at 3973.802 kb on - strand, within Psyr_3322at 3973.803 kb on + strand, within Psyr_3322at 3973.803 kb on + strand, within Psyr_3322at 3973.803 kb on + strand, within Psyr_3322at 3973.803 kb on + strand, within Psyr_3322at 3973.803 kb on + strand, within Psyr_3322at 3973.804 kb on - strand, within Psyr_3322at 3973.804 kb on - strand, within Psyr_3322at 3973.804 kb on - strand, within Psyr_3322at 3974.055 kb on + strand, within Psyr_3322at 3974.055 kb on + strand, within Psyr_3322at 3974.055 kb on + strand, within Psyr_3322at 3974.056 kb on - strand, within Psyr_3322at 3974.056 kb on - strand, within Psyr_3322at 3974.067 kb on + strand, within Psyr_3322at 3974.067 kb on + strand, within Psyr_3322at 3974.067 kb on + strand, within Psyr_3322at 3974.067 kb on + strand, within Psyr_3322at 3974.067 kb on + strand, within Psyr_3322at 3974.067 kb on + strand, within Psyr_3322at 3974.068 kb on - strand, within Psyr_3322at 3974.068 kb on - strand, within Psyr_3322at 3974.068 kb on - strand, within Psyr_3322at 3974.068 kb on - strand, within Psyr_3322at 3974.068 kb on - strand, within Psyr_3322at 3974.256 kb on + strand, within Psyr_3322at 3974.505 kb on - strandat 3974.551 kb on - strandat 3974.554 kb on + strandat 3974.554 kb on + strandat 3974.555 kb on - strandat 3974.705 kb on + strand, within Psyr_3323at 3974.705 kb on + strand, within Psyr_3323at 3974.705 kb on + strand, within Psyr_3323at 3974.706 kb on - strand, within Psyr_3323at 3974.706 kb on - strand, within Psyr_3323at 3974.706 kb on - strand, within Psyr_3323at 3974.706 kb on - strand, within Psyr_3323at 3974.913 kb on - strand, within Psyr_3323at 3975.269 kb on + strand, within Psyr_3323

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Biochanin a diacetate 10 mM
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3,972,472 + Psyr_3321 0.24 -0.6
3,972,846 + Psyr_3321 0.64 +0.2
3,972,851 - Psyr_3321 0.65 +0.4
3,973,051 + Psyr_3321 0.86 -0.8
3,973,051 + Psyr_3321 0.86 +0.8
3,973,052 - Psyr_3321 0.86 -1.4
3,973,115 - -0.4
3,973,115 - -0.7
3,973,166 + -0.2
3,973,166 + -3.2
3,973,167 - +0.3
3,973,232 - +0.1
3,973,308 + -0.2
3,973,309 - -1.4
3,973,628 + Psyr_3322 0.31 -1.4
3,973,629 - Psyr_3322 0.31 +0.0
3,973,770 + Psyr_3322 0.43 +0.4
3,973,771 - Psyr_3322 0.43 -2.4
3,973,801 + Psyr_3322 0.45 -0.0
3,973,802 - Psyr_3322 0.45 -1.7
3,973,802 - Psyr_3322 0.45 -0.2
3,973,802 - Psyr_3322 0.45 +0.3
3,973,803 + Psyr_3322 0.45 +0.7
3,973,803 + Psyr_3322 0.45 -0.2
3,973,803 + Psyr_3322 0.45 +0.5
3,973,803 + Psyr_3322 0.45 -1.7
3,973,803 + Psyr_3322 0.45 -0.4
3,973,804 - Psyr_3322 0.45 -0.4
3,973,804 - Psyr_3322 0.45 -0.5
3,973,804 - Psyr_3322 0.45 -1.4
3,974,055 + Psyr_3322 0.66 +0.0
3,974,055 + Psyr_3322 0.66 -0.1
3,974,055 + Psyr_3322 0.66 -0.7
3,974,056 - Psyr_3322 0.66 -0.1
3,974,056 - Psyr_3322 0.66 -0.5
3,974,067 + Psyr_3322 0.67 +0.9
3,974,067 + Psyr_3322 0.67 +1.1
3,974,067 + Psyr_3322 0.67 +1.1
3,974,067 + Psyr_3322 0.67 +0.0
3,974,067 + Psyr_3322 0.67 +0.9
3,974,067 + Psyr_3322 0.67 -1.1
3,974,068 - Psyr_3322 0.67 -0.8
3,974,068 - Psyr_3322 0.67 +0.4
3,974,068 - Psyr_3322 0.67 -0.5
3,974,068 - Psyr_3322 0.67 -0.1
3,974,068 - Psyr_3322 0.67 +0.9
3,974,256 + Psyr_3322 0.82 -0.9
3,974,505 - -1.4
3,974,551 - +2.9
3,974,554 + -1.0
3,974,554 + +0.5
3,974,555 - +0.2
3,974,705 + Psyr_3323 0.11 +0.2
3,974,705 + Psyr_3323 0.11 -0.3
3,974,705 + Psyr_3323 0.11 -0.8
3,974,706 - Psyr_3323 0.11 +1.7
3,974,706 - Psyr_3323 0.11 +1.9
3,974,706 - Psyr_3323 0.11 +0.1
3,974,706 - Psyr_3323 0.11 -0.6
3,974,913 - Psyr_3323 0.30 +1.4
3,975,269 + Psyr_3323 0.62 -1.1

Or see this region's nucleotide sequence