Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2730

Experiment: KB with Biochanin a diacetate 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_2728 and Psyr_2729 are separated by 211 nucleotidesPsyr_2729 and Psyr_2730 are separated by 29 nucleotidesPsyr_2730 and Psyr_2731 are separated by 328 nucleotides Psyr_2728: Psyr_2728 - vanillin synthase / trans-feruloyl-CoA hydratase, at 3,311,551 to 3,312,381 _2728 Psyr_2729: Psyr_2729 - transcriptional regulator, MarR family, at 3,312,593 to 3,313,081 _2729 Psyr_2730: Psyr_2730 - outer membrane porin, at 3,313,111 to 3,314,433 _2730 Psyr_2731: Psyr_2731 - General substrate transporter:Major facilitator superfamily, at 3,314,762 to 3,315,982 _2731 Position (kb) 3313 3314 3315Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3312.159 kb on - strand, within Psyr_2728at 3312.327 kb on + strandat 3312.328 kb on - strandat 3312.328 kb on - strandat 3312.328 kb on - strandat 3312.371 kb on + strandat 3312.371 kb on + strandat 3312.371 kb on + strandat 3312.371 kb on + strandat 3312.372 kb on - strandat 3312.372 kb on - strandat 3312.372 kb on - strandat 3312.372 kb on - strandat 3312.372 kb on - strandat 3312.423 kb on + strandat 3312.424 kb on - strandat 3312.424 kb on - strandat 3312.512 kb on + strandat 3312.512 kb on + strandat 3312.512 kb on + strandat 3312.513 kb on - strandat 3312.513 kb on - strandat 3312.513 kb on - strandat 3312.513 kb on - strandat 3312.513 kb on - strandat 3312.521 kb on + strandat 3312.521 kb on + strandat 3312.521 kb on + strandat 3312.521 kb on + strandat 3312.521 kb on - strandat 3312.522 kb on - strandat 3312.525 kb on + strandat 3312.525 kb on + strandat 3312.526 kb on - strandat 3313.071 kb on - strandat 3313.071 kb on - strandat 3313.071 kb on - strandat 3313.130 kb on + strandat 3313.130 kb on + strandat 3313.130 kb on + strandat 3313.130 kb on + strandat 3313.131 kb on - strandat 3313.131 kb on - strandat 3313.131 kb on - strandat 3313.131 kb on - strandat 3313.196 kb on + strandat 3313.196 kb on + strandat 3313.197 kb on - strandat 3313.254 kb on - strand, within Psyr_2730at 3313.334 kb on + strand, within Psyr_2730at 3313.334 kb on + strand, within Psyr_2730at 3313.335 kb on - strand, within Psyr_2730at 3313.383 kb on - strand, within Psyr_2730at 3313.388 kb on + strand, within Psyr_2730at 3313.388 kb on + strand, within Psyr_2730at 3313.388 kb on + strand, within Psyr_2730at 3313.388 kb on + strand, within Psyr_2730at 3313.388 kb on + strand, within Psyr_2730at 3313.389 kb on - strand, within Psyr_2730at 3313.389 kb on - strand, within Psyr_2730at 3313.389 kb on - strand, within Psyr_2730at 3313.389 kb on - strand, within Psyr_2730at 3313.389 kb on - strand, within Psyr_2730at 3313.392 kb on + strand, within Psyr_2730at 3313.392 kb on + strand, within Psyr_2730at 3313.393 kb on - strand, within Psyr_2730at 3313.393 kb on - strand, within Psyr_2730at 3313.393 kb on - strand, within Psyr_2730at 3313.393 kb on - strand, within Psyr_2730at 3313.478 kb on + strand, within Psyr_2730at 3313.478 kb on + strand, within Psyr_2730at 3313.478 kb on + strand, within Psyr_2730at 3313.478 kb on + strand, within Psyr_2730at 3313.479 kb on - strand, within Psyr_2730at 3313.479 kb on - strand, within Psyr_2730at 3313.479 kb on - strand, within Psyr_2730at 3313.511 kb on + strand, within Psyr_2730at 3313.512 kb on - strand, within Psyr_2730at 3313.691 kb on + strand, within Psyr_2730at 3313.692 kb on - strand, within Psyr_2730at 3313.692 kb on - strand, within Psyr_2730at 3313.702 kb on + strand, within Psyr_2730at 3313.715 kb on + strand, within Psyr_2730at 3313.715 kb on + strand, within Psyr_2730at 3313.716 kb on - strand, within Psyr_2730at 3313.716 kb on - strand, within Psyr_2730at 3313.763 kb on + strand, within Psyr_2730at 3313.764 kb on - strand, within Psyr_2730at 3313.832 kb on + strand, within Psyr_2730at 3313.833 kb on - strand, within Psyr_2730at 3313.833 kb on - strand, within Psyr_2730at 3313.833 kb on - strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.894 kb on + strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3313.895 kb on - strand, within Psyr_2730at 3314.045 kb on + strand, within Psyr_2730at 3314.046 kb on - strand, within Psyr_2730at 3314.249 kb on + strand, within Psyr_2730at 3314.249 kb on + strand, within Psyr_2730at 3314.249 kb on + strand, within Psyr_2730at 3314.250 kb on - strand, within Psyr_2730at 3314.250 kb on - strand, within Psyr_2730at 3314.250 kb on - strand, within Psyr_2730at 3314.262 kb on + strand, within Psyr_2730at 3314.262 kb on + strand, within Psyr_2730at 3314.263 kb on - strand, within Psyr_2730at 3314.263 kb on - strand, within Psyr_2730at 3314.263 kb on - strand, within Psyr_2730at 3314.264 kb on + strand, within Psyr_2730at 3314.264 kb on + strand, within Psyr_2730at 3314.264 kb on + strand, within Psyr_2730at 3314.264 kb on + strand, within Psyr_2730at 3314.264 kb on + strand, within Psyr_2730at 3314.264 kb on + strand, within Psyr_2730at 3314.264 kb on + strand, within Psyr_2730at 3314.264 kb on + strand, within Psyr_2730at 3314.264 kb on + strand, within Psyr_2730at 3314.265 kb on - strand, within Psyr_2730at 3314.265 kb on - strand, within Psyr_2730at 3314.265 kb on - strand, within Psyr_2730at 3314.265 kb on - strand, within Psyr_2730at 3314.265 kb on - strand, within Psyr_2730at 3314.265 kb on - strand, within Psyr_2730at 3314.265 kb on - strand, within Psyr_2730at 3314.265 kb on - strand, within Psyr_2730at 3314.265 kb on - strand, within Psyr_2730at 3314.265 kb on - strand, within Psyr_2730at 3314.265 kb on - strand, within Psyr_2730at 3314.267 kb on + strand, within Psyr_2730at 3314.268 kb on - strand, within Psyr_2730at 3314.268 kb on - strand, within Psyr_2730at 3314.268 kb on - strand, within Psyr_2730at 3314.268 kb on - strand, within Psyr_2730at 3314.268 kb on - strand, within Psyr_2730at 3314.268 kb on - strand, within Psyr_2730at 3314.268 kb on - strand, within Psyr_2730at 3314.448 kb on + strandat 3314.448 kb on + strandat 3314.448 kb on + strandat 3314.449 kb on - strandat 3314.449 kb on - strandat 3314.449 kb on - strandat 3314.809 kb on + strandat 3314.810 kb on - strandat 3315.041 kb on + strand, within Psyr_2731at 3315.041 kb on + strand, within Psyr_2731at 3315.041 kb on + strand, within Psyr_2731at 3315.042 kb on - strand, within Psyr_2731at 3315.179 kb on + strand, within Psyr_2731at 3315.179 kb on + strand, within Psyr_2731at 3315.180 kb on - strand, within Psyr_2731at 3315.180 kb on - strand, within Psyr_2731at 3315.180 kb on - strand, within Psyr_2731at 3315.285 kb on + strand, within Psyr_2731at 3315.426 kb on - strand, within Psyr_2731at 3315.426 kb on - strand, within Psyr_2731

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Biochanin a diacetate 10 mM
remove
3,312,159 - Psyr_2728 0.73 -0.9
3,312,327 + +1.4
3,312,328 - -0.1
3,312,328 - -0.6
3,312,328 - -1.3
3,312,371 + +3.2
3,312,371 + +2.2
3,312,371 + -2.0
3,312,371 + -1.7
3,312,372 - +2.6
3,312,372 - -0.5
3,312,372 - -0.8
3,312,372 - +0.4
3,312,372 - +1.2
3,312,423 + -0.8
3,312,424 - +0.4
3,312,424 - +0.1
3,312,512 + +0.6
3,312,512 + -1.9
3,312,512 + -0.2
3,312,513 - +4.0
3,312,513 - -0.9
3,312,513 - -0.4
3,312,513 - +1.1
3,312,513 - +1.0
3,312,521 + -0.7
3,312,521 + -0.1
3,312,521 + +0.9
3,312,521 + +0.2
3,312,521 - -1.8
3,312,522 - +1.8
3,312,525 + -0.1
3,312,525 + -0.1
3,312,526 - +2.0
3,313,071 - -1.4
3,313,071 - +0.8
3,313,071 - +1.6
3,313,130 + -0.7
3,313,130 + +1.5
3,313,130 + -1.0
3,313,130 + +0.6
3,313,131 - +0.7
3,313,131 - +0.5
3,313,131 - +0.5
3,313,131 - -0.2
3,313,196 + -0.4
3,313,196 + -0.6
3,313,197 - +2.0
3,313,254 - Psyr_2730 0.11 +0.9
3,313,334 + Psyr_2730 0.17 +0.4
3,313,334 + Psyr_2730 0.17 +1.2
3,313,335 - Psyr_2730 0.17 +0.3
3,313,383 - Psyr_2730 0.21 -0.0
3,313,388 + Psyr_2730 0.21 -1.4
3,313,388 + Psyr_2730 0.21 -0.0
3,313,388 + Psyr_2730 0.21 -0.7
3,313,388 + Psyr_2730 0.21 -0.3
3,313,388 + Psyr_2730 0.21 +1.5
3,313,389 - Psyr_2730 0.21 +0.5
3,313,389 - Psyr_2730 0.21 +0.8
3,313,389 - Psyr_2730 0.21 -0.6
3,313,389 - Psyr_2730 0.21 +0.6
3,313,389 - Psyr_2730 0.21 +2.8
3,313,392 + Psyr_2730 0.21 +1.6
3,313,392 + Psyr_2730 0.21 +1.4
3,313,393 - Psyr_2730 0.21 +0.6
3,313,393 - Psyr_2730 0.21 -0.3
3,313,393 - Psyr_2730 0.21 +0.7
3,313,393 - Psyr_2730 0.21 +0.0
3,313,478 + Psyr_2730 0.28 -0.9
3,313,478 + Psyr_2730 0.28 -0.6
3,313,478 + Psyr_2730 0.28 -0.7
3,313,478 + Psyr_2730 0.28 -0.8
3,313,479 - Psyr_2730 0.28 +2.9
3,313,479 - Psyr_2730 0.28 +0.2
3,313,479 - Psyr_2730 0.28 -0.6
3,313,511 + Psyr_2730 0.30 -0.0
3,313,512 - Psyr_2730 0.30 +2.8
3,313,691 + Psyr_2730 0.44 -2.0
3,313,692 - Psyr_2730 0.44 +1.6
3,313,692 - Psyr_2730 0.44 +0.6
3,313,702 + Psyr_2730 0.45 +1.2
3,313,715 + Psyr_2730 0.46 -0.0
3,313,715 + Psyr_2730 0.46 -0.3
3,313,716 - Psyr_2730 0.46 -1.6
3,313,716 - Psyr_2730 0.46 -2.2
3,313,763 + Psyr_2730 0.49 +0.2
3,313,764 - Psyr_2730 0.49 -0.1
3,313,832 + Psyr_2730 0.54 +2.6
3,313,833 - Psyr_2730 0.55 -0.5
3,313,833 - Psyr_2730 0.55 +0.7
3,313,833 - Psyr_2730 0.55 +0.2
3,313,894 + Psyr_2730 0.59 +0.2
3,313,894 + Psyr_2730 0.59 +0.4
3,313,894 + Psyr_2730 0.59 +0.5
3,313,894 + Psyr_2730 0.59 +0.1
3,313,894 + Psyr_2730 0.59 +3.5
3,313,894 + Psyr_2730 0.59 +0.0
3,313,894 + Psyr_2730 0.59 +1.5
3,313,894 + Psyr_2730 0.59 +3.5
3,313,894 + Psyr_2730 0.59 -0.2
3,313,894 + Psyr_2730 0.59 +2.2
3,313,894 + Psyr_2730 0.59 -0.9
3,313,894 + Psyr_2730 0.59 -1.1
3,313,894 + Psyr_2730 0.59 -0.8
3,313,894 + Psyr_2730 0.59 +1.2
3,313,894 + Psyr_2730 0.59 +1.2
3,313,894 + Psyr_2730 0.59 -0.5
3,313,894 + Psyr_2730 0.59 +0.6
3,313,894 + Psyr_2730 0.59 -0.5
3,313,894 + Psyr_2730 0.59 +1.1
3,313,894 + Psyr_2730 0.59 -0.8
3,313,894 + Psyr_2730 0.59 -0.4
3,313,894 + Psyr_2730 0.59 +0.8
3,313,895 - Psyr_2730 0.59 +0.1
3,313,895 - Psyr_2730 0.59 -0.5
3,313,895 - Psyr_2730 0.59 -0.1
3,313,895 - Psyr_2730 0.59 +3.2
3,313,895 - Psyr_2730 0.59 +0.3
3,313,895 - Psyr_2730 0.59 -0.8
3,313,895 - Psyr_2730 0.59 +0.6
3,313,895 - Psyr_2730 0.59 -1.4
3,313,895 - Psyr_2730 0.59 -2.2
3,313,895 - Psyr_2730 0.59 -1.0
3,313,895 - Psyr_2730 0.59 +0.2
3,314,045 + Psyr_2730 0.71 +1.2
3,314,046 - Psyr_2730 0.71 +1.6
3,314,249 + Psyr_2730 0.86 -0.3
3,314,249 + Psyr_2730 0.86 +3.5
3,314,249 + Psyr_2730 0.86 +1.5
3,314,250 - Psyr_2730 0.86 +1.2
3,314,250 - Psyr_2730 0.86 +1.1
3,314,250 - Psyr_2730 0.86 +1.3
3,314,262 + Psyr_2730 0.87 +0.5
3,314,262 + Psyr_2730 0.87 -0.8
3,314,263 - Psyr_2730 0.87 -0.9
3,314,263 - Psyr_2730 0.87 +1.4
3,314,263 - Psyr_2730 0.87 +2.4
3,314,264 + Psyr_2730 0.87 -0.4
3,314,264 + Psyr_2730 0.87 +2.2
3,314,264 + Psyr_2730 0.87 -1.3
3,314,264 + Psyr_2730 0.87 -0.8
3,314,264 + Psyr_2730 0.87 +0.9
3,314,264 + Psyr_2730 0.87 -2.0
3,314,264 + Psyr_2730 0.87 -1.7
3,314,264 + Psyr_2730 0.87 +0.4
3,314,264 + Psyr_2730 0.87 +1.8
3,314,265 - Psyr_2730 0.87 +0.6
3,314,265 - Psyr_2730 0.87 +0.7
3,314,265 - Psyr_2730 0.87 -0.3
3,314,265 - Psyr_2730 0.87 +1.0
3,314,265 - Psyr_2730 0.87 -1.1
3,314,265 - Psyr_2730 0.87 +1.1
3,314,265 - Psyr_2730 0.87 -0.6
3,314,265 - Psyr_2730 0.87 +2.2
3,314,265 - Psyr_2730 0.87 +2.2
3,314,265 - Psyr_2730 0.87 +0.5
3,314,265 - Psyr_2730 0.87 +1.2
3,314,267 + Psyr_2730 0.87 -0.8
3,314,268 - Psyr_2730 0.87 +2.2
3,314,268 - Psyr_2730 0.87 +0.4
3,314,268 - Psyr_2730 0.87 -1.0
3,314,268 - Psyr_2730 0.87 +0.6
3,314,268 - Psyr_2730 0.87 -0.0
3,314,268 - Psyr_2730 0.87 -1.1
3,314,268 - Psyr_2730 0.87 +0.4
3,314,448 + -0.8
3,314,448 + -1.0
3,314,448 + +1.5
3,314,449 - -0.6
3,314,449 - +1.3
3,314,449 - +0.2
3,314,809 + -1.8
3,314,810 - +0.7
3,315,041 + Psyr_2731 0.23 -1.2
3,315,041 + Psyr_2731 0.23 -0.1
3,315,041 + Psyr_2731 0.23 +1.5
3,315,042 - Psyr_2731 0.23 -1.0
3,315,179 + Psyr_2731 0.34 +0.1
3,315,179 + Psyr_2731 0.34 +0.6
3,315,180 - Psyr_2731 0.34 +1.0
3,315,180 - Psyr_2731 0.34 -0.5
3,315,180 - Psyr_2731 0.34 -1.0
3,315,285 + Psyr_2731 0.43 -1.5
3,315,426 - Psyr_2731 0.54 +0.9
3,315,426 - Psyr_2731 0.54 +1.1

Or see this region's nucleotide sequence