Experiment: KB with Biochanin a diacetate 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2206 and Psyr_2207 overlap by 4 nucleotides Psyr_2207 and Psyr_2208 are separated by 223 nucleotides Psyr_2208 and Psyr_2209 are separated by 60 nucleotides
Psyr_2206: Psyr_2206 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 2,563,580 to 2,564,728
_2206
Psyr_2207: Psyr_2207 - ANTAR, at 2,564,725 to 2,565,357
_2207
Psyr_2208: Psyr_2208 - Amidase, at 2,565,581 to 2,567,116
_2208
Psyr_2209: Psyr_2209 - ABC transporter, substrate-binding protein, aliphatic sulfonate, at 2,567,177 to 2,568,151
_2209
Position (kb)
2565
2566
2567
2568 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2564.581 kb on + strand, within Psyr_2206 at 2564.581 kb on + strand, within Psyr_2206 at 2564.582 kb on - strand, within Psyr_2206 at 2564.585 kb on + strand, within Psyr_2206 at 2564.585 kb on + strand, within Psyr_2206 at 2564.585 kb on + strand, within Psyr_2206 at 2564.586 kb on - strand, within Psyr_2206 at 2564.586 kb on - strand, within Psyr_2206 at 2564.586 kb on - strand, within Psyr_2206 at 2564.586 kb on - strand, within Psyr_2206 at 2564.586 kb on - strand, within Psyr_2206 at 2564.591 kb on + strand, within Psyr_2206 at 2565.253 kb on + strand, within Psyr_2207 at 2565.424 kb on + strand at 2565.443 kb on + strand at 2565.589 kb on - strand at 2565.722 kb on + strand at 2565.722 kb on + strand at 2565.722 kb on + strand at 2565.722 kb on + strand at 2565.722 kb on + strand at 2565.723 kb on - strand at 2565.723 kb on - strand at 2565.723 kb on - strand at 2565.804 kb on - strand, within Psyr_2208 at 2566.033 kb on + strand, within Psyr_2208 at 2566.210 kb on + strand, within Psyr_2208 at 2566.214 kb on + strand, within Psyr_2208 at 2566.214 kb on + strand, within Psyr_2208 at 2566.229 kb on + strand, within Psyr_2208 at 2566.230 kb on - strand, within Psyr_2208 at 2566.643 kb on + strand, within Psyr_2208 at 2566.643 kb on + strand, within Psyr_2208 at 2566.644 kb on - strand, within Psyr_2208 at 2566.664 kb on + strand, within Psyr_2208 at 2566.665 kb on - strand, within Psyr_2208 at 2566.739 kb on + strand, within Psyr_2208 at 2566.767 kb on - strand, within Psyr_2208 at 2566.811 kb on + strand, within Psyr_2208 at 2566.846 kb on - strand, within Psyr_2208 at 2566.907 kb on + strand, within Psyr_2208 at 2566.907 kb on + strand, within Psyr_2208 at 2566.908 kb on - strand, within Psyr_2208 at 2566.908 kb on - strand, within Psyr_2208 at 2566.908 kb on - strand, within Psyr_2208 at 2567.073 kb on - strand at 2567.302 kb on - strand, within Psyr_2209 at 2567.481 kb on + strand, within Psyr_2209 at 2567.482 kb on - strand, within Psyr_2209 at 2567.494 kb on - strand, within Psyr_2209 at 2567.691 kb on + strand, within Psyr_2209 at 2567.745 kb on - strand, within Psyr_2209 at 2567.745 kb on - strand, within Psyr_2209 at 2567.818 kb on - strand, within Psyr_2209
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Biochanin a diacetate 10 mM remove 2,564,581 + Psyr_2206 0.87 +0.1 2,564,581 + Psyr_2206 0.87 +0.8 2,564,582 - Psyr_2206 0.87 +1.4 2,564,585 + Psyr_2206 0.87 -0.8 2,564,585 + Psyr_2206 0.87 -0.8 2,564,585 + Psyr_2206 0.87 -0.6 2,564,586 - Psyr_2206 0.88 +0.2 2,564,586 - Psyr_2206 0.88 -0.5 2,564,586 - Psyr_2206 0.88 +0.4 2,564,586 - Psyr_2206 0.88 -0.8 2,564,586 - Psyr_2206 0.88 +2.1 2,564,591 + Psyr_2206 0.88 +0.2 2,565,253 + Psyr_2207 0.83 -1.1 2,565,424 + -1.0 2,565,443 + +0.2 2,565,589 - +1.9 2,565,722 + -1.7 2,565,722 + +1.7 2,565,722 + +0.3 2,565,722 + +0.3 2,565,722 + -1.5 2,565,723 - +1.1 2,565,723 - +0.8 2,565,723 - -0.1 2,565,804 - Psyr_2208 0.15 -0.5 2,566,033 + Psyr_2208 0.29 +1.1 2,566,210 + Psyr_2208 0.41 +1.0 2,566,214 + Psyr_2208 0.41 +1.6 2,566,214 + Psyr_2208 0.41 -0.0 2,566,229 + Psyr_2208 0.42 +1.1 2,566,230 - Psyr_2208 0.42 +1.0 2,566,643 + Psyr_2208 0.69 -0.1 2,566,643 + Psyr_2208 0.69 +1.7 2,566,644 - Psyr_2208 0.69 +0.6 2,566,664 + Psyr_2208 0.71 -0.8 2,566,665 - Psyr_2208 0.71 +0.1 2,566,739 + Psyr_2208 0.75 +0.6 2,566,767 - Psyr_2208 0.77 +3.4 2,566,811 + Psyr_2208 0.80 +3.7 2,566,846 - Psyr_2208 0.82 -1.5 2,566,907 + Psyr_2208 0.86 +0.3 2,566,907 + Psyr_2208 0.86 +0.3 2,566,908 - Psyr_2208 0.86 -0.7 2,566,908 - Psyr_2208 0.86 +0.5 2,566,908 - Psyr_2208 0.86 +1.1 2,567,073 - +0.2 2,567,302 - Psyr_2209 0.13 +0.5 2,567,481 + Psyr_2209 0.31 +0.8 2,567,482 - Psyr_2209 0.31 +0.7 2,567,494 - Psyr_2209 0.33 +1.4 2,567,691 + Psyr_2209 0.53 -2.0 2,567,745 - Psyr_2209 0.58 -0.3 2,567,745 - Psyr_2209 0.58 +1.4 2,567,818 - Psyr_2209 0.66 -0.0
Or see this region's nucleotide sequence