Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_666 and HP15_667 overlap by 25 nucleotides HP15_667 and HP15_668 are separated by 1 nucleotides HP15_668 and HP15_669 overlap by 1 nucleotides HP15_669 and HP15_670 are separated by 74 nucleotides
HP15_666: HP15_666 - conserved hypothetical protein, at 686,724 to 687,284
_666
HP15_667: HP15_667 - prophage LambdaW5, minor tail protein Z-like protein, at 687,260 to 687,802
_667
HP15_668: HP15_668 - conserved hypothetical protein, at 687,804 to 688,115
_668
HP15_669: HP15_669 - protein containing Rho termination factor, N-terminal domain, at 688,115 to 688,414
_669
HP15_670: HP15_670 - peptidase U35, phage prohead, at 688,489 to 690,591
_670
Position (kb) 687
688
689 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 686.809 kb on - strand, within HP15_666 at 686.839 kb on + strand, within HP15_666 at 686.872 kb on + strand, within HP15_666 at 686.872 kb on + strand, within HP15_666 at 686.880 kb on - strand, within HP15_666 at 686.903 kb on - strand, within HP15_666 at 686.912 kb on - strand, within HP15_666 at 686.949 kb on - strand, within HP15_666 at 687.036 kb on - strand, within HP15_666 at 687.140 kb on + strand, within HP15_666 at 687.213 kb on - strand, within HP15_666 at 687.284 kb on + strand at 687.354 kb on + strand, within HP15_667 at 687.354 kb on + strand, within HP15_667 at 687.425 kb on + strand, within HP15_667 at 687.425 kb on + strand, within HP15_667 at 687.433 kb on + strand, within HP15_667 at 687.433 kb on - strand, within HP15_667 at 687.433 kb on - strand, within HP15_667 at 687.455 kb on - strand, within HP15_667 at 687.512 kb on - strand, within HP15_667 at 687.519 kb on + strand, within HP15_667 at 687.526 kb on + strand, within HP15_667 at 687.529 kb on - strand, within HP15_667 at 687.544 kb on + strand, within HP15_667 at 687.552 kb on - strand, within HP15_667 at 687.782 kb on - strand at 687.848 kb on + strand, within HP15_668 at 687.867 kb on + strand, within HP15_668 at 687.875 kb on - strand, within HP15_668 at 687.997 kb on - strand, within HP15_668 at 688.048 kb on + strand, within HP15_668 at 688.057 kb on - strand, within HP15_668 at 688.164 kb on - strand, within HP15_669 at 688.196 kb on + strand, within HP15_669 at 688.267 kb on - strand, within HP15_669 at 688.278 kb on + strand, within HP15_669 at 688.325 kb on - strand, within HP15_669 at 688.329 kb on - strand, within HP15_669 at 688.338 kb on + strand, within HP15_669 at 688.461 kb on + strand at 688.469 kb on - strand at 688.608 kb on + strand at 688.608 kb on + strand at 688.608 kb on + strand at 688.608 kb on + strand at 688.608 kb on + strand at 688.616 kb on - strand at 688.616 kb on - strand at 688.689 kb on + strand at 688.766 kb on + strand, within HP15_670 at 688.766 kb on + strand, within HP15_670 at 688.766 kb on + strand, within HP15_670 at 688.799 kb on + strand, within HP15_670 at 688.878 kb on - strand, within HP15_670 at 689.024 kb on - strand, within HP15_670 at 689.088 kb on + strand, within HP15_670 at 689.098 kb on + strand, within HP15_670
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 686,809 - HP15_666 0.15 -0.1 686,839 + HP15_666 0.20 -0.7 686,872 + HP15_666 0.26 +0.1 686,872 + HP15_666 0.26 +0.8 686,880 - HP15_666 0.28 +0.2 686,903 - HP15_666 0.32 +0.4 686,912 - HP15_666 0.34 -0.6 686,949 - HP15_666 0.40 +0.9 687,036 - HP15_666 0.56 +1.7 687,140 + HP15_666 0.74 -0.3 687,213 - HP15_666 0.87 +0.3 687,284 + -2.1 687,354 + HP15_667 0.17 +0.3 687,354 + HP15_667 0.17 +2.8 687,425 + HP15_667 0.30 +1.2 687,425 + HP15_667 0.30 -0.0 687,433 + HP15_667 0.32 +0.5 687,433 - HP15_667 0.32 +2.3 687,433 - HP15_667 0.32 -0.2 687,455 - HP15_667 0.36 -0.4 687,512 - HP15_667 0.46 +1.5 687,519 + HP15_667 0.48 +1.9 687,526 + HP15_667 0.49 +0.5 687,529 - HP15_667 0.50 +0.2 687,544 + HP15_667 0.52 -1.9 687,552 - HP15_667 0.54 -0.9 687,782 - +1.5 687,848 + HP15_668 0.14 +0.6 687,867 + HP15_668 0.20 +1.6 687,875 - HP15_668 0.23 +0.8 687,997 - HP15_668 0.62 -1.7 688,048 + HP15_668 0.78 +1.2 688,057 - HP15_668 0.81 +1.6 688,164 - HP15_669 0.16 -1.1 688,196 + HP15_669 0.27 +1.5 688,267 - HP15_669 0.51 +2.1 688,278 + HP15_669 0.54 -0.6 688,325 - HP15_669 0.70 -0.1 688,329 - HP15_669 0.71 +1.3 688,338 + HP15_669 0.74 +1.6 688,461 + +0.1 688,469 - +0.9 688,608 + +0.1 688,608 + -0.6 688,608 + +0.2 688,608 + -0.3 688,608 + -1.4 688,616 - -1.6 688,616 - -0.3 688,689 + +0.3 688,766 + HP15_670 0.13 +4.1 688,766 + HP15_670 0.13 +0.6 688,766 + HP15_670 0.13 +1.7 688,799 + HP15_670 0.15 +1.4 688,878 - HP15_670 0.18 -0.7 689,024 - HP15_670 0.25 -0.5 689,088 + HP15_670 0.28 +1.4 689,098 + HP15_670 0.29 +1.1
Or see this region's nucleotide sequence