Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p42g27 and HP15_p42g28 are separated by 15 nucleotides HP15_p42g28 and HP15_p42g29 are separated by 0 nucleotides HP15_p42g29 and HP15_p42g30 are separated by 29 nucleotides HP15_p42g30 and HP15_p42g31 are separated by 13 nucleotides HP15_p42g31 and HP15_p42g32 are separated by 144 nucleotides HP15_p42g32 and HP15_p42g33 overlap by 4 nucleotides
HP15_p42g27: HP15_p42g27 - TraC DNA primase, at 21,954 to 25,115
_p42g27
HP15_p42g28: HP15_p42g28 - conserved hypothetical protein, at 25,131 to 25,385
_p42g28
HP15_p42g29: HP15_p42g29 - hypothetical protein, at 25,386 to 25,562
_p42g29
HP15_p42g30: HP15_p42g30 - YacC protein, at 25,592 to 26,452
_p42g30
HP15_p42g31: HP15_p42g31 - conserved hypothetical protein, secreted, at 26,466 to 26,819
_p42g31
HP15_p42g32: HP15_p42g32 - hypothetical protein, at 26,964 to 27,095
_p42g32
HP15_p42g33: HP15_p42g33 - protein containing resolvase N-terminal domain, at 27,092 to 27,727
_p42g33
Position (kb) 25
26
27 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 24.599 kb on + strand, within HP15_p42g27 at 24.607 kb on - strand, within HP15_p42g27 at 24.619 kb on - strand, within HP15_p42g27 at 24.648 kb on + strand, within HP15_p42g27 at 24.654 kb on - strand, within HP15_p42g27 at 24.726 kb on - strand, within HP15_p42g27 at 24.778 kb on + strand, within HP15_p42g27 at 24.801 kb on + strand at 24.801 kb on + strand at 24.804 kb on - strand at 24.821 kb on - strand at 24.821 kb on - strand at 24.841 kb on + strand at 24.850 kb on - strand at 24.854 kb on + strand at 24.854 kb on + strand at 24.857 kb on - strand at 24.862 kb on + strand at 24.862 kb on + strand at 24.870 kb on - strand at 24.870 kb on - strand at 24.872 kb on + strand at 24.872 kb on + strand at 24.872 kb on + strand at 24.872 kb on + strand at 24.877 kb on + strand at 24.880 kb on - strand at 24.880 kb on - strand at 24.880 kb on - strand at 24.882 kb on + strand at 24.885 kb on - strand at 24.894 kb on + strand at 24.902 kb on - strand at 24.904 kb on + strand at 24.904 kb on + strand at 24.912 kb on - strand at 24.921 kb on + strand at 24.929 kb on - strand at 24.929 kb on - strand at 24.966 kb on + strand at 24.974 kb on - strand at 24.976 kb on + strand at 24.978 kb on - strand at 25.004 kb on + strand at 25.004 kb on + strand at 25.009 kb on + strand at 25.011 kb on - strand at 25.017 kb on - strand at 25.017 kb on - strand at 25.019 kb on + strand at 25.066 kb on - strand at 25.066 kb on - strand at 25.066 kb on - strand at 25.138 kb on + strand at 25.170 kb on + strand, within HP15_p42g28 at 25.172 kb on - strand, within HP15_p42g28 at 25.179 kb on - strand, within HP15_p42g28 at 25.198 kb on - strand, within HP15_p42g28 at 25.231 kb on - strand, within HP15_p42g28 at 25.380 kb on + strand at 25.380 kb on + strand at 25.386 kb on - strand at 25.388 kb on - strand at 25.388 kb on - strand at 25.429 kb on + strand, within HP15_p42g29 at 25.520 kb on + strand, within HP15_p42g29 at 25.528 kb on - strand, within HP15_p42g29 at 25.530 kb on + strand, within HP15_p42g29 at 25.530 kb on + strand, within HP15_p42g29 at 25.530 kb on + strand, within HP15_p42g29 at 25.530 kb on + strand, within HP15_p42g29 at 25.530 kb on + strand, within HP15_p42g29 at 25.535 kb on + strand, within HP15_p42g29 at 25.535 kb on + strand, within HP15_p42g29 at 25.538 kb on - strand, within HP15_p42g29 at 25.538 kb on - strand, within HP15_p42g29 at 25.538 kb on - strand, within HP15_p42g29 at 25.579 kb on + strand at 25.605 kb on - strand at 25.617 kb on + strand at 25.617 kb on + strand at 25.630 kb on + strand at 25.633 kb on + strand at 25.637 kb on - strand at 25.674 kb on - strand at 25.696 kb on - strand, within HP15_p42g30 at 25.696 kb on - strand, within HP15_p42g30 at 25.701 kb on - strand, within HP15_p42g30 at 25.752 kb on - strand, within HP15_p42g30 at 25.768 kb on + strand, within HP15_p42g30 at 25.768 kb on + strand, within HP15_p42g30 at 25.882 kb on - strand, within HP15_p42g30 at 25.908 kb on + strand, within HP15_p42g30 at 25.933 kb on - strand, within HP15_p42g30 at 25.947 kb on - strand, within HP15_p42g30 at 25.985 kb on + strand, within HP15_p42g30 at 26.005 kb on + strand, within HP15_p42g30 at 26.006 kb on - strand, within HP15_p42g30 at 26.006 kb on - strand, within HP15_p42g30 at 26.013 kb on - strand, within HP15_p42g30 at 26.074 kb on + strand, within HP15_p42g30 at 26.137 kb on + strand, within HP15_p42g30 at 26.150 kb on - strand, within HP15_p42g30 at 26.162 kb on - strand, within HP15_p42g30 at 26.183 kb on + strand, within HP15_p42g30 at 26.242 kb on + strand, within HP15_p42g30 at 26.250 kb on - strand, within HP15_p42g30 at 26.290 kb on + strand, within HP15_p42g30 at 26.290 kb on + strand, within HP15_p42g30 at 26.303 kb on + strand, within HP15_p42g30 at 26.337 kb on + strand, within HP15_p42g30 at 26.343 kb on + strand, within HP15_p42g30 at 26.409 kb on + strand at 26.462 kb on - strand at 26.485 kb on + strand at 26.485 kb on + strand at 26.485 kb on + strand at 26.485 kb on + strand at 26.485 kb on + strand at 26.493 kb on - strand at 26.493 kb on - strand at 26.493 kb on - strand at 26.605 kb on + strand, within HP15_p42g31 at 26.607 kb on + strand, within HP15_p42g31 at 26.607 kb on + strand, within HP15_p42g31 at 26.661 kb on - strand, within HP15_p42g31 at 26.662 kb on - strand, within HP15_p42g31 at 26.663 kb on + strand, within HP15_p42g31 at 26.690 kb on + strand, within HP15_p42g31 at 26.698 kb on - strand, within HP15_p42g31 at 26.767 kb on - strand, within HP15_p42g31 at 26.783 kb on + strand, within HP15_p42g31 at 26.791 kb on + strand at 26.791 kb on - strand at 26.994 kb on + strand, within HP15_p42g32 at 27.014 kb on + strand, within HP15_p42g32 at 27.027 kb on - strand, within HP15_p42g32 at 27.133 kb on + strand at 27.179 kb on - strand, within HP15_p42g33 at 27.179 kb on - strand, within HP15_p42g33 at 27.181 kb on - strand, within HP15_p42g33 at 27.192 kb on - strand, within HP15_p42g33 at 27.252 kb on + strand, within HP15_p42g33 at 27.252 kb on + strand, within HP15_p42g33 at 27.260 kb on - strand, within HP15_p42g33 at 27.260 kb on - strand, within HP15_p42g33 at 27.320 kb on - strand, within HP15_p42g33 at 27.330 kb on + strand, within HP15_p42g33 at 27.343 kb on - strand, within HP15_p42g33 at 27.415 kb on + strand, within HP15_p42g33
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 24,599 + HP15_p42g27 0.84 -0.3 24,607 - HP15_p42g27 0.84 +0.0 24,619 - HP15_p42g27 0.84 -0.3 24,648 + HP15_p42g27 0.85 -0.8 24,654 - HP15_p42g27 0.85 +0.2 24,726 - HP15_p42g27 0.88 -0.5 24,778 + HP15_p42g27 0.89 -0.7 24,801 + -0.4 24,801 + -0.8 24,804 - -0.4 24,821 - +0.5 24,821 - +1.1 24,841 + -0.8 24,850 - -0.7 24,854 + +0.2 24,854 + +1.9 24,857 - -0.8 24,862 + +1.7 24,862 + -0.4 24,870 - -0.6 24,870 - +0.4 24,872 + -0.9 24,872 + +0.1 24,872 + +1.4 24,872 + -0.8 24,877 + +1.6 24,880 - +0.5 24,880 - -1.4 24,880 - +1.7 24,882 + +0.0 24,885 - -1.0 24,894 + +1.1 24,902 - +0.9 24,904 + -0.6 24,904 + +2.4 24,912 - +1.4 24,921 + -0.2 24,929 - +0.2 24,929 - -0.1 24,966 + +1.2 24,974 - -0.3 24,976 + +1.3 24,978 - -0.6 25,004 + +1.4 25,004 + +2.9 25,009 + +1.8 25,011 - -1.2 25,017 - +0.6 25,017 - -0.2 25,019 + -0.4 25,066 - -1.5 25,066 - +1.6 25,066 - -0.7 25,138 + +1.1 25,170 + HP15_p42g28 0.15 -0.0 25,172 - HP15_p42g28 0.16 -0.6 25,179 - HP15_p42g28 0.19 +0.7 25,198 - HP15_p42g28 0.26 -0.5 25,231 - HP15_p42g28 0.39 -0.1 25,380 + -0.4 25,380 + -0.7 25,386 - +0.9 25,388 - -0.1 25,388 - +1.4 25,429 + HP15_p42g29 0.24 +2.6 25,520 + HP15_p42g29 0.76 -0.8 25,528 - HP15_p42g29 0.80 -0.3 25,530 + HP15_p42g29 0.81 +1.5 25,530 + HP15_p42g29 0.81 +1.0 25,530 + HP15_p42g29 0.81 -0.1 25,530 + HP15_p42g29 0.81 +1.6 25,530 + HP15_p42g29 0.81 +2.3 25,535 + HP15_p42g29 0.84 -1.1 25,535 + HP15_p42g29 0.84 +1.4 25,538 - HP15_p42g29 0.86 -0.2 25,538 - HP15_p42g29 0.86 -0.6 25,538 - HP15_p42g29 0.86 +0.9 25,579 + +1.8 25,605 - -0.8 25,617 + -0.3 25,617 + +1.7 25,630 + -1.3 25,633 + +1.4 25,637 - -0.7 25,674 - +1.3 25,696 - HP15_p42g30 0.12 -0.1 25,696 - HP15_p42g30 0.12 -2.6 25,701 - HP15_p42g30 0.13 -1.1 25,752 - HP15_p42g30 0.19 +1.2 25,768 + HP15_p42g30 0.20 -0.6 25,768 + HP15_p42g30 0.20 -0.7 25,882 - HP15_p42g30 0.34 -0.0 25,908 + HP15_p42g30 0.37 +0.2 25,933 - HP15_p42g30 0.40 -0.4 25,947 - HP15_p42g30 0.41 +1.1 25,985 + HP15_p42g30 0.46 +2.6 26,005 + HP15_p42g30 0.48 -0.9 26,006 - HP15_p42g30 0.48 +0.7 26,006 - HP15_p42g30 0.48 +1.8 26,013 - HP15_p42g30 0.49 -1.1 26,074 + HP15_p42g30 0.56 +0.3 26,137 + HP15_p42g30 0.63 +1.5 26,150 - HP15_p42g30 0.65 +1.9 26,162 - HP15_p42g30 0.66 +0.3 26,183 + HP15_p42g30 0.69 -1.2 26,242 + HP15_p42g30 0.75 +1.5 26,250 - HP15_p42g30 0.76 -0.6 26,290 + HP15_p42g30 0.81 +1.4 26,290 + HP15_p42g30 0.81 +0.8 26,303 + HP15_p42g30 0.83 +0.4 26,337 + HP15_p42g30 0.87 -0.3 26,343 + HP15_p42g30 0.87 +1.5 26,409 + -0.5 26,462 - -0.2 26,485 + +1.9 26,485 + -0.9 26,485 + +0.2 26,485 + +0.8 26,485 + -1.0 26,493 - -0.8 26,493 - -2.1 26,493 - -2.3 26,605 + HP15_p42g31 0.39 -1.6 26,607 + HP15_p42g31 0.40 -0.3 26,607 + HP15_p42g31 0.40 +0.0 26,661 - HP15_p42g31 0.55 -0.0 26,662 - HP15_p42g31 0.55 -1.1 26,663 + HP15_p42g31 0.56 +0.8 26,690 + HP15_p42g31 0.63 -0.6 26,698 - HP15_p42g31 0.66 +1.9 26,767 - HP15_p42g31 0.85 -0.7 26,783 + HP15_p42g31 0.90 +2.0 26,791 + +1.0 26,791 - +0.8 26,994 + HP15_p42g32 0.23 -0.4 27,014 + HP15_p42g32 0.38 +0.0 27,027 - HP15_p42g32 0.48 +0.2 27,133 + -1.6 27,179 - HP15_p42g33 0.14 +0.1 27,179 - HP15_p42g33 0.14 +2.4 27,181 - HP15_p42g33 0.14 +1.6 27,192 - HP15_p42g33 0.16 -0.0 27,252 + HP15_p42g33 0.25 +1.8 27,252 + HP15_p42g33 0.25 +2.1 27,260 - HP15_p42g33 0.26 +1.6 27,260 - HP15_p42g33 0.26 +0.5 27,320 - HP15_p42g33 0.36 -1.1 27,330 + HP15_p42g33 0.37 +0.4 27,343 - HP15_p42g33 0.39 +0.7 27,415 + HP15_p42g33 0.51 +1.8
Or see this region's nucleotide sequence