Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4100 and HP15_4101 are separated by 11 nucleotides HP15_4101 and HP15_4102 are separated by 94 nucleotides
HP15_4100: HP15_4100 - long-chain-fatty-acid-CoA ligase, at 4,334,273 to 4,336,084
_4100
HP15_4101: HP15_4101 - membrane protein, at 4,336,096 to 4,336,416
_4101
HP15_4102: HP15_4102 - conserved hypothetical protein, at 4,336,511 to 4,337,497
_4102
Position (kb)
4336
4337 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4335.100 kb on - strand, within HP15_4100 at 4335.123 kb on - strand, within HP15_4100 at 4335.244 kb on + strand, within HP15_4100 at 4335.343 kb on + strand, within HP15_4100 at 4335.351 kb on - strand, within HP15_4100 at 4335.351 kb on - strand, within HP15_4100 at 4335.404 kb on - strand, within HP15_4100 at 4335.421 kb on - strand, within HP15_4100 at 4335.452 kb on - strand, within HP15_4100 at 4335.480 kb on - strand, within HP15_4100 at 4335.494 kb on - strand, within HP15_4100 at 4335.687 kb on - strand, within HP15_4100 at 4335.687 kb on - strand, within HP15_4100 at 4335.738 kb on + strand, within HP15_4100 at 4335.810 kb on - strand, within HP15_4100 at 4335.834 kb on - strand, within HP15_4100 at 4335.839 kb on + strand, within HP15_4100 at 4335.922 kb on - strand at 4335.983 kb on + strand at 4336.013 kb on - strand at 4336.159 kb on - strand, within HP15_4101 at 4336.159 kb on - strand, within HP15_4101 at 4336.159 kb on - strand, within HP15_4101 at 4336.159 kb on - strand, within HP15_4101 at 4336.159 kb on - strand, within HP15_4101 at 4336.159 kb on - strand, within HP15_4101 at 4336.311 kb on - strand, within HP15_4101 at 4336.361 kb on + strand, within HP15_4101 at 4336.445 kb on - strand at 4336.494 kb on + strand at 4336.523 kb on + strand at 4336.523 kb on + strand at 4336.531 kb on - strand at 4336.619 kb on + strand, within HP15_4102 at 4336.655 kb on - strand, within HP15_4102 at 4336.675 kb on - strand, within HP15_4102 at 4336.781 kb on - strand, within HP15_4102 at 4336.870 kb on - strand, within HP15_4102 at 4336.886 kb on + strand, within HP15_4102 at 4337.023 kb on - strand, within HP15_4102 at 4337.055 kb on - strand, within HP15_4102 at 4337.071 kb on - strand, within HP15_4102 at 4337.110 kb on - strand, within HP15_4102 at 4337.113 kb on + strand, within HP15_4102 at 4337.138 kb on + strand, within HP15_4102 at 4337.222 kb on - strand, within HP15_4102 at 4337.310 kb on - strand, within HP15_4102 at 4337.315 kb on - strand, within HP15_4102 at 4337.315 kb on - strand, within HP15_4102 at 4337.391 kb on + strand, within HP15_4102 at 4337.406 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 4,335,100 - HP15_4100 0.46 -0.9 4,335,123 - HP15_4100 0.47 -0.9 4,335,244 + HP15_4100 0.54 -1.2 4,335,343 + HP15_4100 0.59 -0.4 4,335,351 - HP15_4100 0.59 +1.5 4,335,351 - HP15_4100 0.59 +1.4 4,335,404 - HP15_4100 0.62 -0.8 4,335,421 - HP15_4100 0.63 -1.9 4,335,452 - HP15_4100 0.65 -0.1 4,335,480 - HP15_4100 0.67 -0.7 4,335,494 - HP15_4100 0.67 -1.3 4,335,687 - HP15_4100 0.78 -0.0 4,335,687 - HP15_4100 0.78 +1.8 4,335,738 + HP15_4100 0.81 +0.5 4,335,810 - HP15_4100 0.85 +0.5 4,335,834 - HP15_4100 0.86 -0.7 4,335,839 + HP15_4100 0.86 -2.2 4,335,922 - -1.0 4,335,983 + -0.4 4,336,013 - -1.1 4,336,159 - HP15_4101 0.20 +0.1 4,336,159 - HP15_4101 0.20 -0.6 4,336,159 - HP15_4101 0.20 -1.5 4,336,159 - HP15_4101 0.20 +1.1 4,336,159 - HP15_4101 0.20 -0.8 4,336,159 - HP15_4101 0.20 +0.4 4,336,311 - HP15_4101 0.67 -0.0 4,336,361 + HP15_4101 0.83 -0.9 4,336,445 - -1.3 4,336,494 + -2.2 4,336,523 + -0.6 4,336,523 + -0.2 4,336,531 - -1.2 4,336,619 + HP15_4102 0.11 -0.5 4,336,655 - HP15_4102 0.15 -0.8 4,336,675 - HP15_4102 0.17 -0.3 4,336,781 - HP15_4102 0.27 -0.6 4,336,870 - HP15_4102 0.36 -0.5 4,336,886 + HP15_4102 0.38 -0.6 4,337,023 - HP15_4102 0.52 +0.3 4,337,055 - HP15_4102 0.55 -0.5 4,337,071 - HP15_4102 0.57 -0.7 4,337,110 - HP15_4102 0.61 +0.0 4,337,113 + HP15_4102 0.61 -1.1 4,337,138 + HP15_4102 0.64 -0.5 4,337,222 - HP15_4102 0.72 +1.4 4,337,310 - HP15_4102 0.81 +1.5 4,337,315 - HP15_4102 0.81 -0.5 4,337,315 - HP15_4102 0.81 +0.9 4,337,391 + HP15_4102 0.89 -1.4 4,337,406 - +1.4
Or see this region's nucleotide sequence