Strain Fitness in Marinobacter adhaerens HP15 around HP15_40

Experiment: DinoMM minimal media with L-Arginine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_39 and HP15_40 are separated by 430 nucleotidesHP15_40 and HP15_41 are separated by 156 nucleotidesHP15_41 and HP15_42 are separated by 478 nucleotides HP15_39: HP15_39 - ring hydroxylating dioxygenase, alpha subunit, at 43,300 to 44,616 _39 HP15_40: HP15_40 - dioxygenase DitA oxygenase component small subunit-like protein, at 45,047 to 45,211 _40 HP15_41: HP15_41 - conserved hypothetical protein, at 45,368 to 45,718 _41 HP15_42: HP15_42 - short-chain dehydrogenase/reductase SDR, at 46,197 to 46,997 _42 Position (kb) 45 46Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 44.091 kb on + strand, within HP15_39at 44.152 kb on - strand, within HP15_39at 44.164 kb on + strand, within HP15_39at 44.165 kb on - strand, within HP15_39at 44.179 kb on - strand, within HP15_39at 44.214 kb on + strand, within HP15_39at 44.254 kb on - strand, within HP15_39at 44.274 kb on + strand, within HP15_39at 44.276 kb on + strand, within HP15_39at 44.282 kb on - strand, within HP15_39at 44.284 kb on - strand, within HP15_39at 44.284 kb on - strand, within HP15_39at 44.284 kb on - strand, within HP15_39at 44.284 kb on - strand, within HP15_39at 44.377 kb on + strand, within HP15_39at 44.401 kb on - strand, within HP15_39at 44.412 kb on + strand, within HP15_39at 44.412 kb on + strand, within HP15_39at 44.420 kb on - strand, within HP15_39at 44.434 kb on + strand, within HP15_39at 44.604 kb on - strandat 44.611 kb on + strandat 44.633 kb on + strandat 44.661 kb on - strandat 44.709 kb on + strandat 44.709 kb on + strandat 44.709 kb on + strandat 44.716 kb on - strandat 44.717 kb on - strandat 44.807 kb on + strandat 44.825 kb on + strandat 44.887 kb on - strandat 44.904 kb on + strandat 44.909 kb on + strandat 44.912 kb on - strandat 45.091 kb on - strand, within HP15_40at 45.101 kb on - strand, within HP15_40at 45.142 kb on - strand, within HP15_40at 45.143 kb on - strand, within HP15_40at 45.308 kb on - strandat 45.473 kb on - strand, within HP15_41at 45.568 kb on + strand, within HP15_41at 45.577 kb on - strand, within HP15_41at 45.587 kb on - strand, within HP15_41at 45.645 kb on + strand, within HP15_41at 45.653 kb on - strand, within HP15_41at 45.668 kb on - strand, within HP15_41at 45.668 kb on - strand, within HP15_41at 45.675 kb on - strand, within HP15_41at 45.765 kb on + strandat 45.773 kb on + strandat 45.802 kb on - strandat 45.858 kb on - strandat 45.869 kb on + strandat 45.963 kb on + strandat 45.995 kb on + strandat 46.003 kb on - strandat 46.003 kb on - strandat 46.046 kb on - strandat 46.062 kb on + strandat 46.211 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine
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44,091 + HP15_39 0.60 -0.6
44,152 - HP15_39 0.65 +0.2
44,164 + HP15_39 0.66 +1.7
44,165 - HP15_39 0.66 +1.2
44,179 - HP15_39 0.67 +0.4
44,214 + HP15_39 0.69 +0.7
44,254 - HP15_39 0.72 +1.1
44,274 + HP15_39 0.74 -3.1
44,276 + HP15_39 0.74 +0.8
44,282 - HP15_39 0.75 +0.2
44,284 - HP15_39 0.75 +0.3
44,284 - HP15_39 0.75 +0.7
44,284 - HP15_39 0.75 -2.7
44,284 - HP15_39 0.75 -0.5
44,377 + HP15_39 0.82 -0.7
44,401 - HP15_39 0.84 +1.5
44,412 + HP15_39 0.84 +0.8
44,412 + HP15_39 0.84 -1.5
44,420 - HP15_39 0.85 -1.6
44,434 + HP15_39 0.86 -0.5
44,604 - +1.5
44,611 + +0.5
44,633 + -0.8
44,661 - +1.6
44,709 + +1.0
44,709 + -0.0
44,709 + -0.5
44,716 - +2.1
44,717 - +1.7
44,807 + +0.9
44,825 + +1.0
44,887 - -0.9
44,904 + +1.3
44,909 + -2.0
44,912 - -1.2
45,091 - HP15_40 0.27 +1.1
45,101 - HP15_40 0.33 +1.1
45,142 - HP15_40 0.58 +0.5
45,143 - HP15_40 0.58 -0.8
45,308 - +0.1
45,473 - HP15_41 0.30 -1.3
45,568 + HP15_41 0.57 +0.4
45,577 - HP15_41 0.60 -0.9
45,587 - HP15_41 0.62 -1.9
45,645 + HP15_41 0.79 -0.4
45,653 - HP15_41 0.81 +1.2
45,668 - HP15_41 0.85 +1.8
45,668 - HP15_41 0.85 +1.8
45,675 - HP15_41 0.87 -0.7
45,765 + -0.3
45,773 + +1.5
45,802 - +1.8
45,858 - -2.0
45,869 + -1.1
45,963 + +2.4
45,995 + -0.8
46,003 - +1.6
46,003 - +1.4
46,046 - +0.1
46,062 + -0.5
46,211 + -0.7

Or see this region's nucleotide sequence