Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3937 and HP15_3938 are separated by 22 nucleotides HP15_3938 and HP15_3939 are separated by 36 nucleotides HP15_3939 and HP15_3940 are separated by 51 nucleotides
HP15_3937: HP15_3937 - conserved hypothetical protein, membrane, at 4,166,349 to 4,167,713
_3937
HP15_3938: HP15_3938 - D-isomer specific 2-hydroxyacid dehydrogenase family protein, at 4,167,736 to 4,168,665
_3938
HP15_3939: HP15_3939 - hypothetical protein, at 4,168,702 to 4,168,890
_3939
HP15_3940: HP15_3940 - transcriptional regulator, IclR family protein, at 4,168,942 to 4,169,766
_3940
Position (kb)
4167
4168
4169 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4166.737 kb on - strand, within HP15_3937 at 4166.794 kb on + strand, within HP15_3937 at 4166.861 kb on - strand, within HP15_3937 at 4166.861 kb on - strand, within HP15_3937 at 4166.883 kb on - strand, within HP15_3937 at 4167.038 kb on + strand, within HP15_3937 at 4167.046 kb on - strand, within HP15_3937 at 4167.082 kb on + strand, within HP15_3937 at 4167.148 kb on + strand, within HP15_3937 at 4167.156 kb on - strand, within HP15_3937 at 4167.176 kb on - strand, within HP15_3937 at 4167.205 kb on - strand, within HP15_3937 at 4167.257 kb on + strand, within HP15_3937 at 4167.257 kb on + strand, within HP15_3937 at 4167.257 kb on + strand, within HP15_3937 at 4167.257 kb on + strand, within HP15_3937 at 4167.257 kb on + strand, within HP15_3937 at 4167.257 kb on + strand, within HP15_3937 at 4167.265 kb on - strand, within HP15_3937 at 4167.265 kb on - strand, within HP15_3937 at 4167.265 kb on - strand, within HP15_3937 at 4167.265 kb on - strand, within HP15_3937 at 4167.265 kb on - strand, within HP15_3937 at 4167.265 kb on - strand, within HP15_3937 at 4167.265 kb on - strand, within HP15_3937 at 4167.310 kb on + strand, within HP15_3937 at 4167.552 kb on + strand, within HP15_3937 at 4167.592 kb on - strand at 4167.702 kb on + strand at 4167.702 kb on + strand at 4167.702 kb on + strand at 4167.702 kb on + strand at 4167.702 kb on + strand at 4167.710 kb on - strand at 4167.710 kb on - strand at 4167.717 kb on + strand at 4167.722 kb on + strand at 4167.737 kb on - strand at 4167.737 kb on - strand at 4167.783 kb on + strand at 4167.786 kb on - strand at 4167.853 kb on - strand, within HP15_3938 at 4167.996 kb on + strand, within HP15_3938 at 4168.006 kb on + strand, within HP15_3938 at 4168.044 kb on - strand, within HP15_3938 at 4168.085 kb on + strand, within HP15_3938 at 4168.162 kb on + strand, within HP15_3938 at 4168.302 kb on + strand, within HP15_3938 at 4168.322 kb on + strand, within HP15_3938 at 4168.354 kb on - strand, within HP15_3938 at 4168.538 kb on + strand, within HP15_3938 at 4168.614 kb on + strand at 4168.617 kb on + strand at 4168.619 kb on + strand at 4168.622 kb on - strand at 4168.631 kb on + strand at 4168.717 kb on + strand at 4169.056 kb on - strand, within HP15_3940 at 4169.149 kb on + strand, within HP15_3940 at 4169.157 kb on - strand, within HP15_3940 at 4169.158 kb on - strand, within HP15_3940 at 4169.158 kb on - strand, within HP15_3940 at 4169.240 kb on - strand, within HP15_3940 at 4169.271 kb on + strand, within HP15_3940 at 4169.285 kb on - strand, within HP15_3940 at 4169.413 kb on - strand, within HP15_3940 at 4169.536 kb on + strand, within HP15_3940 at 4169.547 kb on + strand, within HP15_3940 at 4169.581 kb on - strand, within HP15_3940 at 4169.591 kb on - strand, within HP15_3940 at 4169.656 kb on + strand, within HP15_3940 at 4169.656 kb on + strand, within HP15_3940 at 4169.661 kb on + strand, within HP15_3940 at 4169.664 kb on - strand, within HP15_3940 at 4169.664 kb on - strand, within HP15_3940
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 4,166,737 - HP15_3937 0.28 -0.3 4,166,794 + HP15_3937 0.33 -1.3 4,166,861 - HP15_3937 0.38 +1.2 4,166,861 - HP15_3937 0.38 -0.1 4,166,883 - HP15_3937 0.39 +3.5 4,167,038 + HP15_3937 0.50 -0.5 4,167,046 - HP15_3937 0.51 +0.9 4,167,082 + HP15_3937 0.54 -1.5 4,167,148 + HP15_3937 0.59 +1.3 4,167,156 - HP15_3937 0.59 +0.3 4,167,176 - HP15_3937 0.61 +0.0 4,167,205 - HP15_3937 0.63 -0.6 4,167,257 + HP15_3937 0.67 -0.6 4,167,257 + HP15_3937 0.67 +0.4 4,167,257 + HP15_3937 0.67 -0.1 4,167,257 + HP15_3937 0.67 +1.3 4,167,257 + HP15_3937 0.67 +0.8 4,167,257 + HP15_3937 0.67 +0.2 4,167,265 - HP15_3937 0.67 -1.8 4,167,265 - HP15_3937 0.67 +1.3 4,167,265 - HP15_3937 0.67 +1.2 4,167,265 - HP15_3937 0.67 +0.9 4,167,265 - HP15_3937 0.67 -0.4 4,167,265 - HP15_3937 0.67 +1.5 4,167,265 - HP15_3937 0.67 +1.7 4,167,310 + HP15_3937 0.70 -0.6 4,167,552 + HP15_3937 0.88 -0.3 4,167,592 - -0.5 4,167,702 + +1.2 4,167,702 + -0.7 4,167,702 + +1.1 4,167,702 + -0.6 4,167,702 + -0.3 4,167,710 - +0.3 4,167,710 - -0.8 4,167,717 + -0.0 4,167,722 + -0.6 4,167,737 - -1.2 4,167,737 - -0.3 4,167,783 + -1.1 4,167,786 - +1.5 4,167,853 - HP15_3938 0.13 -0.7 4,167,996 + HP15_3938 0.28 -0.3 4,168,006 + HP15_3938 0.29 +1.9 4,168,044 - HP15_3938 0.33 -0.3 4,168,085 + HP15_3938 0.38 -0.4 4,168,162 + HP15_3938 0.46 +1.9 4,168,302 + HP15_3938 0.61 -0.1 4,168,322 + HP15_3938 0.63 +1.8 4,168,354 - HP15_3938 0.66 +1.2 4,168,538 + HP15_3938 0.86 -1.1 4,168,614 + +3.3 4,168,617 + -0.4 4,168,619 + -0.8 4,168,622 - +1.3 4,168,631 + -0.1 4,168,717 + -0.6 4,169,056 - HP15_3940 0.14 +2.6 4,169,149 + HP15_3940 0.25 -1.4 4,169,157 - HP15_3940 0.26 -0.2 4,169,158 - HP15_3940 0.26 +0.6 4,169,158 - HP15_3940 0.26 -1.0 4,169,240 - HP15_3940 0.36 -0.9 4,169,271 + HP15_3940 0.40 -0.9 4,169,285 - HP15_3940 0.42 +0.3 4,169,413 - HP15_3940 0.57 +0.7 4,169,536 + HP15_3940 0.72 +0.2 4,169,547 + HP15_3940 0.73 -0.8 4,169,581 - HP15_3940 0.77 +0.5 4,169,591 - HP15_3940 0.79 -0.0 4,169,656 + HP15_3940 0.87 -1.3 4,169,656 + HP15_3940 0.87 +1.2 4,169,661 + HP15_3940 0.87 +0.9 4,169,664 - HP15_3940 0.88 +0.8 4,169,664 - HP15_3940 0.88 -1.3
Or see this region's nucleotide sequence