Experiment: DinoMM minimal media with L-Arginine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3875 and HP15_3876 overlap by 4 nucleotides HP15_3876 and HP15_3877 are separated by 87 nucleotides HP15_3877 and HP15_3878 overlap by 1 nucleotides
HP15_3875: HP15_3875 - acyltransferase, WS/DGAT/MGAT, at 4,101,411 to 4,102,778
_3875
HP15_3876: HP15_3876 - hypothetical protein, at 4,102,775 to 4,102,915
_3876
HP15_3877: HP15_3877 - secretion protein HlyD, at 4,103,003 to 4,104,043
_3877
HP15_3878: HP15_3878 - acriflavin resistance protein D, at 4,104,043 to 4,107,207
_3878
Position (kb)
4103
4104
4105 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4102.003 kb on - strand, within HP15_3875 at 4102.037 kb on + strand, within HP15_3875 at 4102.037 kb on + strand, within HP15_3875 at 4102.039 kb on + strand, within HP15_3875 at 4102.047 kb on - strand, within HP15_3875 at 4102.049 kb on + strand, within HP15_3875 at 4102.193 kb on - strand, within HP15_3875 at 4102.282 kb on + strand, within HP15_3875 at 4102.282 kb on + strand, within HP15_3875 at 4102.348 kb on + strand, within HP15_3875 at 4102.414 kb on - strand, within HP15_3875 at 4102.483 kb on + strand, within HP15_3875 at 4102.605 kb on + strand, within HP15_3875 at 4102.605 kb on + strand, within HP15_3875 at 4102.642 kb on - strand at 4102.642 kb on - strand at 4102.642 kb on - strand at 4102.697 kb on + strand at 4102.697 kb on + strand at 4102.697 kb on + strand at 4102.705 kb on - strand at 4102.741 kb on - strand at 4102.757 kb on + strand at 4102.809 kb on + strand, within HP15_3876 at 4102.948 kb on + strand at 4102.963 kb on + strand at 4102.995 kb on + strand at 4103.005 kb on - strand at 4103.005 kb on - strand at 4103.005 kb on - strand at 4103.039 kb on + strand at 4103.084 kb on - strand at 4103.158 kb on - strand, within HP15_3877 at 4103.210 kb on + strand, within HP15_3877 at 4103.265 kb on + strand, within HP15_3877 at 4103.305 kb on - strand, within HP15_3877 at 4103.380 kb on - strand, within HP15_3877 at 4103.405 kb on + strand, within HP15_3877 at 4103.405 kb on + strand, within HP15_3877 at 4103.413 kb on - strand, within HP15_3877 at 4103.416 kb on + strand, within HP15_3877 at 4103.424 kb on - strand, within HP15_3877 at 4103.588 kb on + strand, within HP15_3877 at 4103.588 kb on + strand, within HP15_3877 at 4103.620 kb on - strand, within HP15_3877 at 4103.648 kb on + strand, within HP15_3877 at 4103.656 kb on - strand, within HP15_3877 at 4103.698 kb on + strand, within HP15_3877 at 4103.706 kb on - strand, within HP15_3877 at 4103.706 kb on - strand, within HP15_3877 at 4103.708 kb on + strand, within HP15_3877 at 4103.736 kb on + strand, within HP15_3877 at 4103.744 kb on - strand, within HP15_3877 at 4103.744 kb on - strand, within HP15_3877 at 4103.924 kb on - strand, within HP15_3877 at 4104.037 kb on + strand at 4104.210 kb on - strand at 4104.220 kb on + strand at 4104.347 kb on + strand at 4104.355 kb on - strand at 4104.370 kb on - strand, within HP15_3878 at 4104.409 kb on - strand, within HP15_3878 at 4104.424 kb on - strand, within HP15_3878 at 4104.540 kb on + strand, within HP15_3878 at 4104.625 kb on - strand, within HP15_3878 at 4104.635 kb on - strand, within HP15_3878 at 4104.662 kb on + strand, within HP15_3878 at 4104.827 kb on + strand, within HP15_3878 at 4104.827 kb on + strand, within HP15_3878 at 4104.859 kb on - strand, within HP15_3878 at 4104.890 kb on + strand, within HP15_3878 at 4105.002 kb on + strand, within HP15_3878
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Arginine remove 4,102,003 - HP15_3875 0.43 -1.1 4,102,037 + HP15_3875 0.46 -0.4 4,102,037 + HP15_3875 0.46 +0.3 4,102,039 + HP15_3875 0.46 -1.5 4,102,047 - HP15_3875 0.46 -0.4 4,102,049 + HP15_3875 0.47 -1.1 4,102,193 - HP15_3875 0.57 -0.2 4,102,282 + HP15_3875 0.64 +1.5 4,102,282 + HP15_3875 0.64 +0.1 4,102,348 + HP15_3875 0.68 -1.3 4,102,414 - HP15_3875 0.73 -0.8 4,102,483 + HP15_3875 0.78 -0.7 4,102,605 + HP15_3875 0.87 -1.0 4,102,605 + HP15_3875 0.87 +1.8 4,102,642 - -0.7 4,102,642 - -0.9 4,102,642 - -2.5 4,102,697 + -1.1 4,102,697 + -0.8 4,102,697 + +0.2 4,102,705 - +0.3 4,102,741 - -0.1 4,102,757 + -0.3 4,102,809 + HP15_3876 0.24 -0.6 4,102,948 + -0.3 4,102,963 + +1.3 4,102,995 + +1.0 4,103,005 - -0.4 4,103,005 - -0.3 4,103,005 - +1.1 4,103,039 + +0.0 4,103,084 - +0.8 4,103,158 - HP15_3877 0.15 +0.8 4,103,210 + HP15_3877 0.20 +1.1 4,103,265 + HP15_3877 0.25 -1.2 4,103,305 - HP15_3877 0.29 -0.7 4,103,380 - HP15_3877 0.36 +0.2 4,103,405 + HP15_3877 0.39 +1.0 4,103,405 + HP15_3877 0.39 +2.1 4,103,413 - HP15_3877 0.39 -0.5 4,103,416 + HP15_3877 0.40 -1.0 4,103,424 - HP15_3877 0.40 -1.6 4,103,588 + HP15_3877 0.56 +1.4 4,103,588 + HP15_3877 0.56 -0.1 4,103,620 - HP15_3877 0.59 -1.2 4,103,648 + HP15_3877 0.62 +0.0 4,103,656 - HP15_3877 0.63 -0.8 4,103,698 + HP15_3877 0.67 -1.4 4,103,706 - HP15_3877 0.68 +0.8 4,103,706 - HP15_3877 0.68 -0.1 4,103,708 + HP15_3877 0.68 -1.0 4,103,736 + HP15_3877 0.70 -0.0 4,103,744 - HP15_3877 0.71 -0.1 4,103,744 - HP15_3877 0.71 +0.5 4,103,924 - HP15_3877 0.88 +1.3 4,104,037 + -0.5 4,104,210 - -1.4 4,104,220 + +0.6 4,104,347 + -0.3 4,104,355 - -0.9 4,104,370 - HP15_3878 0.10 -1.0 4,104,409 - HP15_3878 0.12 +1.4 4,104,424 - HP15_3878 0.12 +0.5 4,104,540 + HP15_3878 0.16 -2.2 4,104,625 - HP15_3878 0.18 +0.9 4,104,635 - HP15_3878 0.19 -0.8 4,104,662 + HP15_3878 0.20 +0.0 4,104,827 + HP15_3878 0.25 -0.4 4,104,827 + HP15_3878 0.25 +0.5 4,104,859 - HP15_3878 0.26 +1.3 4,104,890 + HP15_3878 0.27 -1.2 4,105,002 + HP15_3878 0.30 +1.3
Or see this region's nucleotide sequence